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20. Lafontaine DA, Wilson TJ, Norman DG, Lilley DMJ. The A730 loop is an important
component of the active site of the VS ribozyme. J Mol Biol . 2001;312:663-674.
21. Lafontaine DA, Wilson TJ, Zhao Z-Y, Lilley DMJ. Functional group requirements in
the probable active site of the VS ribozyme. J Mol Biol . 2002;323:23-34.
22. Wilson TJ, McLeod AC, Lilley DMJ. A guanine nucleobase important for catalysis by
the VS ribozyme. EMBO J . 2007;26:2489-2500.
23. Rastogi T, Beattie TL, Olive JE, Collins RA. A long-range pseudoknot is required for
activity of the Neurospora VS ribozyme. EMBO J . 1996;15:2820-2825.
24. Andersen AA, Collins RA. Intramolecular secondary structure rearrangement by the
kissing interaction of
the Neurospora VS ribozyme. Proc Natl Acad Sci USA .
2001;98:7730-7735.
25. Jones FD, Ryder SP, Strobel SA. An efficient ligation reaction promoted by a Varkud
Satellite
ribozyme with extended 5'-
and 3'-termini. Nucleic Acids Res .
2001;29:5115-5120.
26. Guo HCT, Collins RA. Efficient trans-cleavage of a stem-loop RNA substrate by a
ribozyme derived from Neurospora VS RNA. EMBO J . 1995;14:368-376.
27. Duckett DR, Murchie AIH, Diekmann S, von Kitzing E, Kemper B, Lilley DMJ. The
structure of the Holliday junction and its resolution. Cell . 1988;55:79-89.
28. Walter F, Murchie AIH, Lilley DMJ. The folding of the four-way RNA junction of the
hairpin ribozyme. Biochemistry . 1998;37:17629-17636.
29. Walter NG, Hampel KJ, Brown KM, Burke JM. Tertiary structure formation in the
hairpin ribozyme monitored by fluorescence resonance energy transfer. EMBO J .
1998;17:2378-2391.
30. Zhuang XW, Kim HD, Pereira MJB, Babcock HP, Walter NG, Chu S. Correlating
structural
dynamics
and
function
in
single
ribozyme molecules. Science .
2002;296:1473-1476.
31. Tan E, Wilson TJ, Nahas MK, Clegg RM, Lilley DMJ, Ha T. A four-way junction
accelerates hairpin ribozyme folding via a discrete intermediate. Proc Natl Acad Sci
USA . 2003;100:9308-9313.
32. Khvorova A, Lescoute A, Westhof E, Jayasena SD. Sequence elements outside the
hammerhead ribozyme catalytic core enable intracellular activity. Nat Struct Biol .
2003;10:1-5.
33. Penedo JC, Wilson TJ, Jayasena SD, Khvorova A, Lilley DMJ. Folding of the natural
hammerhead ribozyme is enhanced by interaction of auxiliary elements. RNA .
2004;10:880-888.
34. Rupert PB, Ferr´-D'Amar´ AR. Crystal structure of a hairpin ribozyme-inhibitor
complex with implications for catalysis. Nature . 2001;410:780-786.
35. AlamS,Grum-TokarsV,Krucinska J,KundracikML,Wedekind JE.Conformational het-
erogeneity at position U37 of an all-RNA hairpin ribozyme with implications for
metal binding and the catalytic structureof theS-turn. Biochemistry . 2005;44:14396-14408.
36. Butcher SE, Allain FH, Feigon J. Solution structure of the loop B domain from the
hairpin ribozyme. Nat Struct Biol . 1999;6:212-216.
37. Cai ZP, Tinoco I. Solution structure of loop A from the hairpin ribozyme from tobacco
ringspot virus satellite. Biochemistry . 1996;35:6026-6036.
38. Rupert PB, Massey AP, Sigurdsson ST, Ferr´-D'Amar´ AR. Transition state stabiliza-
tion by a catalytic RNA. Science . 2002;298:1421-1424.
39. Lafontaine DA, Norman DG, Lilley DMJ. Structure, folding and activity of the
VS ribozyme:
importance of
the 2-3-6 helical
junction. EMBO J . 2001;20:
1415-1424.
40. Lafontaine DA, Norman DG, Lilley DMJ. The global structure of the VS ribozyme.
EMBO J . 2002;21:2461-2471.
 
 
 
 
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