Biology Reference
In-Depth Information
41.
McLeod AC, Lilley DMJ. Efficient, pH-dependent RNA ligation by the VS ribozyme
in
trans Biochemistry
. 2004;43:1118-1125.
42.
Hiley SL, Collins RA. Rapid formation of a solvent-inaccessible core in the
Neurospora
Varkud satellite ribozyme.
EMBO J
. 2001;20:5461-5469.
43.
Sood VD, Yekta S, Collins RA. The contribution of 2'-hydroxyls to the cleavage activ-
ity of the Neurospora VS ribozyme.
Nucleic Acids Res
. 2002;30:1132-1138.
44.
Ryder SP, Strobel SA. Nucleotide
analog interference mapping.
Methods
.
1999;18:38-50.
45.
Jones FD, Strobel SA. Ionization of a critical adenosine residue in the
Neurospora
Varkud Satellite ribozyme active site.
Biochemistry
. 2003;42:4265-4276.
46.
Lipfert J, Ouellet J, Norman DG, Doniach S, Lilley DMJ. The complete VS ribozyme
in solution studied by small-angle X-ray scattering.
Structure
. 2008;16:1357-1367.
47.
Michiels PJA, Schouten CHJ, Hilbers CW, Heus HA. Structure of the ribozyme sub-
strate hairpin of
Neurospora
VS RNA: a close look at the cleavage site.
RNA
.
2000;6:1821-1832.
48.
Flinders J, Dieckmann T. A pH controlled conformational switch in the cleavage site of
the VS ribozyme substrate RNA.
J Mol Biol
. 2001;308:665-679.
49.
Pley HW, Flaherty KM, McKay DB. Three-dimensional structure of a hammerhead
ribozyme.
Nature
. 1994;372:68-74.
50.
Scott WG, Finch JT, Klug A. The crystal structure of an all-RNA hammerhead
ribozyme: a proposed mechanism for RNA catalytic cleavage.
Cell
. 1995;81:991-1002.
51.
Hoffmann B, Mitchell GT, Gendron P, et al. NMR structure of the active conforma-
tion of the Varkud satellite ribozyme cleavage site.
Proc Natl Acad Sci USA
.
2003;100:7003-7008.
52.
Pereira MJ, Nikolova EN, Hiley SL, Jaikaran D, Collins RA, Walter NG. Single VS
ribozyme molecules reveal dynamic and hierarchical folding toward catalysis.
J Mol Biol
.
2008;382:496-509.
53.
Poon AH, Olive JE, McLaren M, Collins RA. Identification of separate structural
features that affect rate and cation concentration dependence of self-cleavage by the
Neurospora VS ribozyme.
Biochemistry
. 2006;45:13394-13400.
54.
Ouellet J, Byrne M, Lilley DMJ. Formation of an active site in trans by interaction of
two complete Varkud Satellite ribozymes.
RNA
. 2009;15:1822-1826.
55.
Sood VD, Collins RA. Identification of the catalytic subdomain of the VS ribozyme
and evidence for remarkable sequence tolerance in the active site loop.
J Mol Biol
.
2002;320:443-454.
56.
Sood VD, Beattie TL, Collins RA. Identification of phosphate groups involved in
metal binding and tertiary interactions in the core of the
Neurospora
VS ribozyme.
J Mol Biol
. 1998;282:741-750.
57.
Hiley SL, Sood VD, Fan J, Collins RA. 4-thio-U cross-linking identifies the active site
of the VS ribozyme.
EMBO J
. 2002;21:4691-4698.
58.
Zhao Z, McLeod A, Harusawa S, et al. Nucleobase participation in ribozyme catalysis.
J Am Chem Soc
. 2005;127:5026-5027.
59.
Tzokov AB, Murray IA, Grasby JA. The role of magnesium ions and 2'-hydroxyl
groups in the VS ribozyme-substrate interaction.
J Mol Biol
. 2002;324:215-226.
60.
Araki L, Morita K, Yamaguchi M, et al. Synthesis of novel C4-linked C
2
-imidazole
ribonucleoside phosphoramidite, its application to probing the catalytic mechanism
of a ribozyme.
J Org Chem
. 2009;74:2350-2356.
61.
Bevilacqua PC. Mechanistic considerations for general acid-base catalysis by RNA:
revisiting the mechanism of the hairpin ribozyme.
Biochemistry
. 2003;42:2259-2265.
62.
Smith MD, Collins RA. Evidence for proton transfer in the rate-limiting step of a
fast-cleaving Varkud satellite ribozyme.
Proc Natl Acad Sci USA
. 2007;104:5818-5823.
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