Molecular Biology

Adenylylation (Molecular Biology)

Adenylylation is the process in which adenosine-5 ‘ -monophosphate (AMP) is covalently attached to a protein, nucleic acid, or small molecule via a phosphodiester or phosphoramidate linkage. Most often, the AMP is derived from ATP, but in some bacterial adenylylation reactions NADP+ is the source. Similarly, deadenylylation is the process in which AMP is removed […]

Adjuvants (Molecular Biology)

The term adjuvant designates substances that enhance the immune response without affecting the specificity of recognition. "Adjuvanticity" was first described in the 1920 by Ramon, who made the observation that mineral substances (such as metal salts and aluminum) or crude materials (such as tapioca) considerably augment the immune response to various vaccines. He then invented […]

ADP-Ribosylation, Mono (Molecular Biology)

MonoADP-ribosylation is a post-translational modification, catalyzed by ADP-ribosyltransferase (ADPRT), that transfers the ADP-ribose moiety from NAD+ to a specific amino acid residue of target protein and releases the nicotinamide moiety. To date, four amino acid-specific ADPRT have been reported, specific for arginine, cysteine, diphthamide (a modified form of histidine), and asparagine residues. These transferases were […]

Adriamycin (Molecular Biology)

1. Introduction Adriamycin is the trade name for an anthraquinone-containing antibiotic which also has the international nonproprietary name (INN) of doxorubicin (1) and the NCI internal identification number NSC 123127. It is a member of the anthracycline group of compounds that contain an anthraquinone chromophore and a polycyclic ring system (1). It has good anticancer […]

Affinity Chromatography (Molecular Biology)

1. The Basic Principle Affinity chromatography (AC) is a general chromatographic method for the selective extraction and purification of biological macromolecules on the basis of their biorecognition (1-3). The method makes use of the specific physiological affinity between a desired macromolecule (M) and one of its physiological ligands (L). The ligand, or its analogue (L’), […]

Affinity Electrophoresis (Molecular Biology)

By analogy to affinity chromatography, it is possible to introduce specific ligands for a macromolecule into the gels of gel electrophoresis and to measure the specific retardation of the macromolecule due to its interaction with such a reagent. The advantage of such affinity methods lies in the augmented resolving power conferred by the specificity of […]

Affinity Labeling (Molecular Biology)

Affinity labeling is a strategy to modify chemically an amino acid residue within a specific ligand-binding site of an enzyme, either at the active site or at a regulatory, allosteric site. In this approach, a reagent is designed that resembles structurally the natural ligand of the enzyme but features in addition a functional group capable […]

Affinity Maturation (Molecular Biology)

It was observed long ago that the affinities of antibodies increase with time during immunization with a T-dependent antigen. When such an antigen is injected for the first time, it induces the occurrence of low-affinity IgM antibodies, which are rapidly replaced by IgG. This takes place in the first two weeks of the primary response. […]

Affinity Selection (Molecular Biology)

A key requirement of combinatorial library approaches is that desirable molecules must be segregated from the remaining library population. Segregation is most often accomplished by affinity partitioning, in which an immobilized target is used to capture interacting molecules from a solution-phase library. Target proteins can be immobilized either using antibodies bound to Staphylococcus protein A, […]

Agarose (Molecular Biology)

Agarose is one of the two most popular materials used to prepare gels for use in gel electrophoresis, the other being polyacrylamide. Agarose is primarily a polymer of molecular weight approximately 120 kDa of agarobiose (an anhydrogalactose-galactose disaccharide). At sufficiently high concentrations and low temperatures, the polymer forms b-helical strands, which interact by hydrogen bonding […]