Biology Reference
In-Depth Information
Lindeman, L. C., Andersen, I. S., Reiner, A. H., Li, N., Aanes, H.,
strup, O., et al. (2011).
Pre-patterning of developmental gene expression by modified histones before zygotic
genome activation.
Developmental Cell
,
21
, 993-1004.
Lindeman, R. E., & Pelegri, F. (2010). Vertebrate maternal-effect genes: Insights into fertil-
ization, early cleavage divisions, and germ cell determinant localization from studies in
the zebrafish.
Molecular Reproduction and Development
,
77
, 299-313.
Lindeman, L. C., Reiner, A. H., Mathavan, S., Alestr¨m, P., & Collas, P. (2010). Tiling his-
tone H3 lysine 4 and 27 methylation in zebrafish using high-density microarrays.
PLoS
One
,
5
, e15651.
Lindeman, L. C., Winata, C. L., Aanes, H., Mathavan, S., Alestr¨m, P., & Collas, P. (2010).
Chromatin states of developmentally-regulated genes revealed by DNA and histone
methylation patterns in zebrafish embryos.
International Journal of Developmental Biology
,
54
, 803-813.
Mathavan, S., Lee, S. G., Mak, A., Miller, L. D., Murthy, K. R., Govindarajan, K. R., et al.
(2005). Transcriptome analysis of zebrafish embryogenesis using microarrays.
PLoS
Genetics
,
1
, 260-276.
Mhanni, A. A., & McGowan, R. A. (2004). Global changes in genomic methylation levels
during early development of the zebrafish embryo.
Development Genes and Evolution
,
214
,
412-417.
Mikkelsen, T. S., Ku, M., Jaffe, D. B., Issac, B., Lieberman, E., Giannoukos, G., et al. (2007).
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells.
Nature
,
448
, 553-560.
Ooi, S. K., Qiu, C., Bernstein, E., Li, K., Jia, D., Yang, Z., et al. (2007). DNMT3L connects
unmethylated lysine 4 of histone H3 to de novo methylation of DNA.
Nature
,
448
,
714-717.
strup, O., Andersen, I. S., & Collas, P. (2012). Chromatin-linked determinants of zygotic
genome activation.
Cellular and Molecular Life Sciences
, Sep. 11 [Epub ahead of print].
Pauli, A., Valen, E., Lin, M. F., Garber, M., Vastenhouw, N. L., Levin, J. Z., et al. (2012).
Systematic identification of long noncoding RNAs expressed during zebrafish embryo-
genesis.
Genome Research
,
22
, 577-591.
Puschendorf, M., Terranova, R., Boutsma, E., Mao, X., Isono, K., Brykczynska, U., et al.
(2008). PRC1 and Suv39h specify parental asymmetry at constitutive heterochromatin
in early mouse embryos.
Nature Genetics
,
40
, 411-420.
Rada-Iglesias, A., Bajpai, R., Swigut, T., Brugmann, S. A., Flynn, R. A., & Wysocka, J.
(2011). A unique chromatin signature uncovers early developmental enhancers in
humans.
Nature
,
470
, 279-283.
Rai, K., Huggins, I. J., James, S. R., Karpf, A. R., Jones, D. A., &Cairns, B. R. (2008). DNA
demethylation in zebrafish involves the coupling of a deaminase, a glycosylase, and
gadd45.
Cell
,
135
, 1201-1212.
Rai, K., Jafri, I. F., Chidester, S., James, S. R., Karpf, A. R., Cairns, B. R., et al. (2010).
Dnmt3 and G9a cooperate for tissue-specific development in zebrafish.
Journal of Biolog-
ical Chemistry
,
285
, 4110-4121.
Rai, K., Nadauld, L. D., Chidester, S., Manos, E. J., James, S. R., Karpf, A. R., et al. (2006).
Zebra fish Dnmt1 and Suv39h1 regulate organ-specific terminal differentiation during
development.
Molecular and Cellular Biology
,
26
, 7077-7085.
Ram, O., Goren, A., Amit, I., Shoresh, N., Yosef, N., Ernst, J., et al. (2011). Combinatorial
patterning of chromatin regulators uncovered by genome-wide location analysis in
human cells.
Cell
,
147
, 1628-1639.
Reik, W. (2007). Stability and flexibility of epigenetic gene regulation in mammalian devel-
opment.
Nature
,
447
, 425-432.
Reik, W., Dean, W., & Walter, J. (2001). Epigenetic reprogramming in mammalian devel-
opment.
Science
,
293
, 1089-1093.