Biology Reference
In-Depth Information
TABLE II
NetworkComparer Analysis of Lignin Biosynthesis Gene
AtPAL1—Known Components
PFAM family
Description
At
Bd
PAL
Phenylalanine and
histidine ammonia-lyase
At3g53260 (PAL2)
At2g37040 (PAL1)
Bradi3g49250,
Bradi3g49260,
Bradi3g49280
AMP_binding
The family of enzymes
includes luciferase, long
chain fatty acid Co-A
ligase, acetyl-CoA
synthetase and various
other closely-related
synthetases
At1g51680 (4CL1)
At3g21240 (4CL2)
Bradi3g05750
Pkinase
Protein kinase domain
-
Bradi1g35480,
Bradi3g29770,
Bradi1g72430,
Bradi5g08730,
Bradi2g44350
ADH_zinc_N
Zinc-binding
dehydrogenase
At4g34230 (CAD6)
At3g19450 (CAD2)
Bradi3g06480
p450
Cytochrome p450
At2g40890(C3H1)
At2g30490 (C4H)
Bradi2g53470,
Bradi5g02460,
Bradi2g21300
Transferase
This family includes a
number of transferase
enzymes
At1g28680
At5g48930 (HCT)
Bradi5g14720,
Bradi1g36980
Pkinase_Tyr
Protein tyrosine kinase
At5g38280,
At3g54030
Bradi1g47570
UDPGT
UDP-glucoronosyl and
UDP-glucosyl
transferase
At1g06000,
At4g01070,
At2g31750
Bradi2g19160
Epimerase
NAD dependent
epimerase/dehydratase
family
At1g15950 (CCR1)
Bradi1g18020
Peroxidase
Peroxidase
At1g07890
Bradi2g20820,
Bradi2g10150
Aminotran_1_2
Aminotransferase class I
and II
At1g62800
-
Lipase_GDSL
GDSL-like lipase/
acylhydrolase
-
Bradi2g12370
Abhydrolase_1
Alpha/beta hydrolase fold.
This catalytic domain
is found in a very wide
range of enzymes
At3g03990
Bradi1g72760,
Bradi2g04230,
Bradi3g31440
Abhydrolase_3
Alpha/beta hydrolase fold.
This catalytic domain is
found in a very wide
range of enzymes
-
Bradi1g74240
(continues)
