Biology Reference
In-Depth Information
Lebaron, P., Catala, P., Fajon, C., Joux, F., Baudart, J., and Bernard, L. (1997) A new sensitive, whole cell hybridization
technique for detection of bacteria involving a biotinylated oligonucleotide probe targeting rRNA and tyramide signal
amplifi cation.
Appl Environ Microbiol
63:
3274-3278.
Lehtimäki, J., Lyra, C., Suomalainen, S., Sundman, P., Rouhiainen, L., Paulin, L., Salkinoja-Salonen, M., and Sivonen, K. (2000)
Characterization of
Nodularia
strains, cyanobacteria from brackish waters, by genotypic and phenotypic methods.
Int
J Syst Evol
Microbiol
50:
1043-1053.
Li, R., Carmichael, W. W., Liu, Y., and Watanabe, M. M. (2000) Taxonomic revaluation of
Aphanizomenon fl os-aquae
NH-5 based
on morphology and 16S rRNA gene sequences.
Hydrobiologia
438:
99-105.
Ligon, P. J. B., Meyer, K. G., Martin, J. A., and Curtis, S. E. (1991) Nucleotide sequence of a 16S rRNA gene from
Anabaena
sp.
strain PCC 7120.
Nucleic Acids Res
19:
4553.
Liu, W-T., Marsh, T. L., Cheng, H., and Forney, L. J. (1997) Characterization of microbial diversity by determining terminal
restriction fragment length polymorphism of genes encoding 16S rRNA.
Appl Environ Microbiol
63:
4516-4522.
Liu, W.T., Mirzabekov, A. D., and Stahl, D. A. (2001) Optimization of an oligonucleotide microchip for microbial identifi cation
studies: a non-equilibrium dissociation approach.
Environ Microbiol
3:
619-29.
Liu, Z., DeSantis, T. Z., Andersen, G. L., and Knight, R. (2008) Accurate taxonomy assignments from 16S rRNA sequences
produced by highly parallel pyrosequencers.
Nucleic Acids Res
36:
1-11. doi: 10, 1093/nar/gkn 491.
Loughney, K., Lund, E., and Dahlberg, J. E. (1982)
tRNA genes are found between 16s and 23s rRNA genes in
Bacillus subtilis.
Nucleic
Acids Res
10:
1607-1624.
Lovell, C. R., Friez, J., Longshore, J. W., and Bagwell, C. E. (2001) Recovery and phylogenetic analysis of
nifH
sequences from
diazotrophic bacteria associated with dead and above ground biomass of
Spartina alternifl ora
.
Appl Environ Microbiol
67:
5308-5314.
Loy, A., Lehner, A., Lee, N., Adamczyk, J., Meier, H., Ernst, J., Schleifer, K. H., and Wagner, M. (2002) Oligonucleotide microarray
for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment.
Appl
Environ Microbiol
68:
5064-5081.
Lu, W. (1999) Application of molecular biological techniques to the identifi cation of cyanobacteria. Master's thesis, Liverpool
John Moores University, Liverpool, England.
Lu, W., Evans, E. H., McColl, S. K., and Saunders, V. A. (1997) Identifi cation of cyanobacteria by polymorphisms of PCR-
amplifi ed ribosomal DNA spacer region.
FEMS Microbiol
Lett
153:
141-149.
Ludwig, W., and Klenk, H.
(2001) Overview: a phylogenetic backbone and taxonomic framework for procaryotic systematics,
In: Boone, D. R., and and Castenholz, R. W. (Eds.)
Bergey's Manual of Systematic Bacteriology
, vol. 1. Springer-Verlag,
New York, NY, USA. pp. 49-65.
Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar, Buchner, A., Lai, T., Steppi, S., Jobb, G., Förster, W.,
Brettske, I., Gerber, S., Ginhart, A. W., Gross, O., Grumann, S., Hermann, S., Jost, R., König, A., Liss, T., Lüβmann, R.,
May, M., Nonhoff, B., Reichel, B., Strehlow, R., Stamatakis, A., Stuckmann, N., Vilbig, A., Lenke, M., Ludwig, T., Bode,
A., and Schleifer, K-H. (2004) ARB: a software environment for sequence data.
Nucleic Acid Res
32:
1363-1371.
Lyra, C., Hantula, J., Vainio, E., Rapala, J., Rouhiainen, L., and Sivonen, K. (1997) Characterization of cyanobacteria by
SDS-PAGE of whole-cell proteins and PCR-RFLP of the 16S rRNA gene.
Arch Microbiol
168:
176-184.
Lyra, C., Suomalainen, S., Gugger, M., Vezie, C., Sundman, P., Paulin, L., and Sivonen, K. (2001) Molecular characterization
of planktic cyanobacteria of
Anabaena
,
Aphanizomenon
,
Microcystis
and
Planktothrix
genera.
Int J Syst Evol Microbiol
51:
513-526.
Maidak, B. L., Cole, J. R., Lilburn, T. G., Parker, C. T., Jr., Saxman, P. R., Farris, R. J., Garrity, G. M., Olsen, G. J., Schmidt, T.
M. and Tiedje J. M. (2001) The RDP-II (Ribosomal Database Project).
Nucleic Acids Res
29:
173-174.
Maiden, M. C., Bygraves, J. A., Feil, E., Morelli, G, Russell, J. E., Urwin, R., Zhang, Q., Zhou, J., Zurth, K., Caugant, D. A.,
Feavers, I. M., Achtman, M., and Spratt, B. G. (1998) Multilocus sequence typing: a portable approach to the identifi cation
of clones within populations of pathogenic microorganisms.
Proc Natl Acad Sci USA
95:
3140-3145.
Majer, D., Lewis, B. G., and Mithen, R. (1998) Genetic variation among fi eld isolates of
Pyrenopeziza brassicae
.
Plant Pathol
47:
22-28.
Majer, D., Mithen, R., Lewis, B. G., Vos, P., and Oliver, R. P. (1996) The use of AFLP fi ngerprinting for the detection of genetic
variation in fungi.
Mycol Res
100:
1107-1111.
Makarova, K. S., Ponomarev, V. A. and Koonin, E. V. (2001) Two C or not two C: recurrent disruption of Zn-ribbons, gene
duplication, lineage-specifi c gene loss, and horizontal gene transfer in evolution of bacterial ribosomal proteins.
Genome
Biol
2:
RESEARCH 0033.
Malone, T. C., Ducklow, H. W., Peele, E. R., and Pike
.
S. E.
(1991) Picoplankton carbon fl ux in Chesapeake Bay.
Mar Ecol Prog
Ser
78:
11-22.
Manichanh, C., Chapple, C. E., Frangeul, L., Gloux, K., Guigo, R., and Dore, J. (2008) A comparison of random sequence reads
versus 16S rDNA sequences for estimating the biodiversity of a metagenomic library.
Nucleic Acids Res
36:
5180-5188.