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Kim, S-G., Rhee, S-K., Ahn, C. Y., Ko, S-R., Choi, G-G., Bae, J-W., Park, Y-H., and Oh, H-M. (2006) Determination of
cyanobacterial diversity during algal blooms in Daechung reservoir, Korea, on the basis of
cpcBA
intergenic spacer
analysis.
Appl Environ Microbiol
72:
3252-3258.
Kimura, M.
(1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of
nucleotide sequences.
J Mol Evol
16:
111-120.
Kimura, M.
(1983) The neutral theory of molecular evolution. In:
M. Nei and R. K. Koehn (Eds.),
Evolution of Genes and
Proteins
. Sinauer
Associates Inc. Publishers, Sunderland, MA, USA. pp. 208-233.
King, J. L., and Jukes, T. H. (1969) Non-Darwinian evolution.
Science
164:
788-798.
Kitts, C. L.
(2001) Terminal-restriction fragment patterns: a tool for comparing microbial communities and assessing community
dynamics.
Curr Issues Intest Microbiol
2:
17-25.
Koizumi, Y., Kelly, J. J., Nakagawa, T., Urakawa, H., El-Fantroussi, S., Al-Muzaini, S., Fukui, M., Urushigawa,Y., and Stahl,
D.A. (2002) Parallel characterization of anaerobic toluene- and ethylbenzene degrading microbial consortia by PCR-
denaturing gradient gel electrophoresis, RNA-DNA membrane hybridization, and DNA microarray technology.
Appl
Environ Microbiol
68:
3215-3225.
Komárek, J. (2003) Problem of the taxonomic category “species” in cyanobacteria.
Arch Hydrobiol Algol
Stud
109:
281-297.
Komárek, J. (2005) The modern classifi cation of Cyanoprokaryotes (cyanobacteria).
Oceanological and Hydrobiological Studies
Vol XXXIV, Supplement 3, pp. 5-17.
Komárek, J., and Anagnostidis, K. (1986) Modern approach to the classifi cation system of Cyanophytes. 2: Chroococcales.
Arch Hydrobiol Algol Stud
43:
157-226.
Komárek, J., and Anagnostidis, K. (1989). Modern approach to the classifi cation system of Cyanophytes 4. Nostocales.
Arch
Hydrobiol
Suppl
82:
247-345
Komárek, J., and Kovacik, L. (1989) Trichome structure of four
Aphanizomenon
taxa (Cyanophyceae) from Czechoslovakia,
with notes on the taxonomy and delimitation of the genus.
Plant Syst Evol
164:
47-64.
Komárek, J., and Komárkova, J. (2006) Diversity of
Aphanizomenon
-like cyanobacteria
. Czech Phycology, Olomouc
6:
1-32.
Konstantinidis, K. T., and Tiedje, J. M. (2005) Genomic insights that advance the species defi nition for prokaryotes.
Proc Natl
Acad Sci USA
102:
2567-2572. doi: 10.1073/pnas. 0409727102
Konstantinidis, K. T., Ramette, A., and Tiedje, J. M. (2006) The bacterial species defi nition in the genomic era.
Phil Trans R Soc
B
361:
1929-1940. doi: 1098/rstb.2006.1920.
Konstantinidis, K. T., and Tiedje, J. M. (2007) Prokaryotic taxonomy and phylogeny in the genomic era: advancements and
challenges ahead.
Curr Opin Microbiol
10:
504-509.
Koonin, E. V. (2009) Darwinian evolution in the light of genomics.
Nucleic Acids Res
37:
1011-1034.
Kumari, N., Srivastava, A. K., Bhargava, P., and Rai, L. C. (2009) Molecular approaches towards assessment of cyanobacterial
diversity.
Afr J Biotechnol
8:
4284-4298. http: //academicjournals.org/AJB
Kurmayer, R., Dittmann, E., Fastner, J., and Chorus, I. E. (2002) Diversity of microcystin genes within a population of the
toxic cyanobacterium
Microcystis
spp. in Lake Wannsee (Berlin, Germany).
Microb Ecol
43:
107-118.
Kwon, S. W., Park, J.-Y., Kim, J.-S., Kang, J.-W., Cho, Y.-H., Lim, C.-K., Parker, M. A., and Lee, G.-B.. (2005) Phylogenetic
analysis of the genera
Bradyrhizobium
,
Mesorhizobium
,
Rhizobium
, and
Sinorhizobium
on the basis of 16S rRNA gene and
internally transcribed spacer region sequences.
Int J Syst Evol Microbiol
55
:
263-270.
Laamanen, M. J., Forsström, L., and Sivonen, K. (2002) Diversity of
Aphanizomenon fl os-aquae
(cyanobacterium) populations
along a Baltic Sea salinity gradient.
Appl Environ Microbiol
68:
5296-5303.
Lachance, M. (1981) Genetic relatedness of heterocystous cyanobacteria by deoxyribonucleic acid-deoxyribonucleic acid
reassociation.
Int J Syst Evol Microbiol
31:
139-147.
Laguerre, G., Allard, M., Revoy, F., and Amarger,
N. (1994) Rapid identifi cation of rhizobia by restriction fragment length
polymorphism analysis of PCR-amplifi ed 16S rRNA genes.
Appl Environ Microbiol
60:
56-63.
Laloui, W., Palinska, K.A., Rippka, R., Partensky, F., Tandeau de Marsac, N., Herdman, M., and Iteman
,
I.
(2002) Genotyping
of axenic and non-axenic isolates of the genus
Prochlorococcus
and the OMF-'
Synechococcus
' clade by size, sequence
analysis or RFLP of the internal transcribed spacer of the ribosomal operon.
Microbiology
148:
453-465.
Lane, D.J., Pace, B., Olsen, G. J., Stahl, D. A., Sogin, M. L. and Pace, N. R. (1985) Rapid determination of 16S ribosomal RNA
sequences for phylogenetic analyses
. Proc Natl Acad Sci USA
82:
6955-6959.
Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P. A., McWilliam, H., Valentin, F., Wallace, I. M., Wilm,
A., Lopez, R., Thompson, J. D., Gibson, T. J. and Higgins, D. G. (2007) ClustalW and ClustalX version 2.0.
Bioinformatics
23:
2947-2948. doi.10: 1093/bioinformatics/blm/04
Lavin, P., Gómez, P., González, B., and Ulloa, O. (2008) Diversity of the marine picocyanobacteria
Prochlorococcus
and
Synechococcus
assessed by terminal restriction fragment length polymorphisms of 16S-23S rRNA internal transcribed
spacer sequences.
Revista Chilena de Historia Natural
81:
515-531.
Lawrence, J. G., and Ochman, H. C. (1998) Molecular archaeology of
Escherichia coli
genome.
Proc Natl Acad Sci USA
95:
9413-9417.