Chemistry Reference
In-Depth Information
51.
Garcia - Diaz , M. ; Bebenek , K. ; Krahn , J.M. ; Pedersen , L.C.
; Kunkel , T.A.; Role of the
catalytic metal during polymerization by DNA polymerase lambda; DNA Repair (Amst.) ,
2007 , 6 , 1333 - 1340 .
Garcia - Diaz , M. ; Bebenek , K. ; Krahn , J.M. ; Kunkel , T.A. ; Pedersen , L.C. ; A closed con-
formation for the Pol lambda catalytic cycle; Nat. Struct. Mol. Biol. , 2005 , 12 , 97 - 98 .
Showalter , A.K. ; Tsai , M.D. ; A reexamination of the nucleotide incorporation fi delity of
DNA polymerases; Biochem. , 2002 , 41 , 10571 - 10576 .
Wong , I. ; Patel , S.S. ; Johnson , K.A. ; An induced - fi t kinetic mechanism for DNA replica-
tion fi delity: direct measurement by single- turnover
52.
53.
54.
kinetics ;
Biochem. ,
1992 ,
30 ,
526 - 537 .
Li , Y. ; Korolev , S. ; Waksman , G. ; Crystal structures of open and closed forms of binary
and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I:
structural basis for nucleotide incorporation; EMBO J. , 1998 , 17 , 7514 - 7525 .
Shah , A.M. ; Li , S.X. ; Anderson , K.S. ; Sweasy , J.B.; Y265H mutator mutant of DNA
polymerase beta. Proper teometric alignment is critical for fi delity; J. Biol. Chem. , 2001 ,
276 , 10824 - 10831 .
Zhong , X. ; Patel , S.S. ; Werneburg , B.G. ; Tsai , M.D. ; DNA polymerase beta: multiple
conformational changes in the mechanism of catalysis; Biochem. ,
55.
56.
57.
1997 ,
36 ,
11891 - 11900 .
Bakhtina , M. ; Lee , S. ; Wang , Y. ; Dunlap , C. ; Lamarche , B. ; Tsai , M.D. ; Use of viscogens,
dNTPalphaS, and rhodium(III) as probes in stopped- fl ow experiments to obtain new
evidence for the mechanism of catalysis by DNA polymerase beta; Biochem. , 2005 , 44 ,
5177 - 5187 .
Rothwell , P.J. ; Mitaksov , V. ; Waksman , G. ; Motions of the fi ngers subdomain of klentaq1
are fast and not rate limiting: implications for the molecular basis of fi delity in DNA
polymerases ; Mol. Cell , 2005 , 19 , 345 - 355 .
Zhang , H. ; Cao , W. ; Zakharova , E. ; Konigsberg , W. ; De La Cruz , E.M. ; Fluorescence of
2-aminopurine reveals rapid conformational changes in the RB69 DNA polymerase-
primer/template complexes upon binding and incorporation of matched deoxynucleo-
side triphosphates; Nucleic Acids Res. , 2007 , 35 , 6052 - 6062 .
Fiala , K.A.; Suo, Z.; Mechanism of DNA polymerization catalyzed by Sulfolobus solfa-
taricus P2 DNA polymerase IV; Biochem. , 2004 , 43 , 2116 - 2125 .
Song , J.J. ; Smith , S.K. ; Hannon , G.J. ; Joshua - Tor , L. ; Crystal structure of Argonaute and
its implications for RISC slicer activity; Science , 2004 , 305 , 1434 - 1437 .
Nowotny , M. ; Gaidamakov , S.A. ; Crouch , R.J. ; Yang , W. ; Crystal structures of RNase H
bound to an RNA/DNA hybrid: substrate specifi city and metal- dependent catalysis ; Cell ,
2005 , 121 , 1005 - 1016 .
Steiniger - White , M. ; Rayment , I. ; Reznikoff , W.S. ; Structure/function insights into Tn5
transposition ; Curr. Opin. Struct. Biol. , 2004 , 14 , 50 - 57 .
Pingoud , A. ; Fuxreiter , M. ; Pingoud , V. ; Wende , W. ; Type II restriction endonucleases:
structure and mechanism; Cell Mol. Life Sci. , 2005 , 62 , 685 - 707 .
Kovall , R.A. ; Matthews , B.W.; Structural, functional, and evolutionary relationships
between lambda-exonuclease and the type II restriction endonucleases; Proc. Natl. Acad.
Sci. USA , 1998 , 95 , 7893 - 7897 .
Lee , J.Y. ; Chang , J. ; Joseph , N. ; Ghirlando , R. ; Rao , D.N. ; Yang , W. ; MutH complexed with
hemi- and unmethylated DNAs: coupling base recognition and DNA cleavage; Mol. Cell ,
2005 , 20 , 155 - 166 .
Goedken , E.R. ; Marqusee , S. ; Co - crystal of Escherichia coli RNase HI with Mn2+ ions
reveals two divalent metals bound in the active site; J. Biol. Chem. ,
58.
59.
60.
61.
62.
63.
64.
65.
66.
67.
68.
2001 ,
276 ,
7266 - 7271 .
Tsunaka , Y. ; Takano , K. ; Matsumura , H. ; Yamagata , Y. ; Kanaya , S. ; Identifi cation of single
Mn(2+) binding sites required for activation of the mutant proteins of E.coli RNase HI
at Glu48 and/or Asp134 by X- ray crystallography ; J. Mol. Biol. , 2005 , 345 , 1171 - 1183 .
Maignan , S. ; Guilloteau , J.P. ;
69.
70.
Zhou - Liu , Q. ; Clement - Mella , C. ; Mikol , V. ; Crystal struc-
tures of the catalytic domain of HIV-1 integrase free and complexed with its metal
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