Chemistry Reference
In-Depth Information
28.
Cann , I.K. ; Ishino , Y.; Archaeal DNA replication: identifying the pieces to solve a puzzle;
Genetics
, 1999 ,
152
, 1249 - 1267 .
Steitz , T.A. ; Yin , Y.W.; Accuracy, lesion bypass, strand displacement and translocation by
DNA polymerases;
Philos. Trans. R. Soc. Lond. B Biol. Sci.
, 2004 ,
359
, 17 - 23 .
Moon , A.F. ; Garcia - Diaz , M. ; Batra , V.K. ; Beard , W.A. ; Bebenek , K. ; Kunkel , T.A.
et al.
;
The X family portrait: Structural insights into biological functions of X family polymer-
ases ;
DNA Repair (Amst.)
, 2007 ,
6
, 1709 - 1725 .
Yang , W. ; Woodgate , R. ; What a difference a decade makes: insights into translesion
DNA synthesis;
Proc. Natl. Acad. Sci. USA
, 2007 ,
104
, 15591 - 15598 .
Bailey , S. ; Wing , R.A. ; Steitz , T.A. ; The structure of
T. aquaticus
DNA polymerase III is
distinct from eukaryotic replicative DNA polymerases;
Cell
, 2006 ,
126
, 893 - 904 .
Lamers , M.H. ; Georgescu , R.E. ; Lee , S.G. ; O ' Donnell , M. ; Kuriyan , J. ; Crystal structure
of the catalytic alpha subunit of
E. coli
replicative DNA polymerase III;
Cell
, 2006 ,
126
,
881 - 892 .
Ferrer - Orta , C. ; Arias , A. ; Escarmis , C. ; Verdaguer , N. ; A comparison of viral RNA -
dependent RNA polymerases;
Curr. Opin. Struct. Biol.
, 2006 ,
16
, 27 - 34 .
Hall , T.M. ; Poly(A) tail synthesis and regulation: recent structural insights ;
Curr. Opin.
Struct. Biol.
, 2002 ,
12
, 82 - 88 .
Martin , G. ; Keller , W. ; Doublie , S. ; Crystal structure of mammalian poly(A) polymerase
in complex with an analog of ATP;
EMBO J.
, 2000 ,
19
, 4193 - 4203 .
Xiong , Y. ; Steitz , T.A. ; A story with a good ending: tRNA 3 ′ - end maturation by CCA -
adding enzymes ;
Curr. Opin. Struct. Biol.
, 2006 ,
16
, 12 - 17 .
Kornberg , R.D. ; The molecular basis of eucaryotic transcription ;
Cell Death Differ.
, 2007 ,
14
, 1989 - 1997 .
Murakami , K.S. ; Darst , S.A. ; Bacterial RNA polymerases: the whole story ;
Curr. Opin.
Struct. Biol.
, 2003 ,
13
, 31 - 39 .
Batra , V.K. ; Beard , W.A. ; Shock , D.D. ; Krahn , J.M. ; Pedersen , L.C. ; Wilson , S.H. ;
Magnesium-induced assembly of a complete DNA polymerase catalytic complex;
Structure
, 2006 ,
14
, 757 - 766 .
Doubli é , S. ; Tabor , S. ; Long , A.M. ; Richardson , C.C. ; Ellenberger , T. ; Crystal structure of
a bacteriophage T7 DNA replication complex at 2.2 A resolution ;
Nature
, 1998 ,
391
,
251 - 258 .
Li , Y. ; Dutta , S. ; Doublie , S. ; Bdour , H.M. ; Taylor , J.S. ; Ellenberger , T. ; Nucleotide inser-
tion opposite a cis-syn thymine dimer by a replicative DNA polymerase from bacteri-
ophage T7;
Nat. Struct. Mol. Biol.
, 2004 ,
11
, 784 - 790 .
Johnson , S.J. ; Taylor , J.S. ; Beese , L.S. ; Processive DNA synthesis observed in a polymer-
ase crystal suggests a mechanism for the prevention of frameshift mutations;
Proc. Natl.
Acad. Sci. USA
, 2003 ,
100
, 3895 - 3900 .
Franklin , M.C. ; Wang , J. ; Steitz , T.A. ; Structure of the replicating complex of a pol alpha
family DNA polymerase;
Cell
, 2001 ,
105
, 657 - 667 .
Huang , H. ; Chopra , R. ; Verdine , G.L. ; Harrison , S.C.; Structure of a covalently trapped
catalytic complex of HIV-1 reverse transcriptase: implications for drug resistance;
Science
, 1998 ,
282
, 1669 - 1675 .
Wang , D. ; Bushnell , D.A. ; Westover , K.D. ; Kaplan , C.D. ; Kornberg , R.D. ; Structural basis
of transcription: role of the trigger loop in substrate specifi city and catalysis;
Cell
, 2006 ,
127
, 941 - 954 .
Westover , K.D. ; Bushnell , D.A. ; Kornberg , R.D. ; Structural basis of transcription: nucle-
otide selection by rotation in the RNA polymerase II active center;
Cell
, 2004 ,
119
,
481 - 489 .
Yang , W. ; Portraits of a Y - family DNA polymerase ;
FEBS Lett.
, 2005 ,
579
, 868 -
872 .
Yin , Y.W. ; Steitz , T.A. ; The structural mechanism of translocation and helicase activity
in T7 RNA polymerase;
Cell
, 2004 ,
116
, 393 - 404 .
Vaisman , A. ; Ling , H. ; Woodgate , R. ; Yang , W. ; Fidelity of Dpo4: effect of metal ions,
nucleotide selection and pyrophosphorolysis;
EMBO J.
, 2005 ,
24
, 2957 - 2967 .
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31.
32.
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