Biomedical Engineering Reference
In-Depth Information
11. Schneider, T.E., Barland, C., Alex, A.M.
et al
. (2003) Measuring stem cell frequency in epidermis:
a quantitative in vivo functional assay for long-term repopulating cells.
Proceedings of the National
Academy of Sciences of the United States of America
,
100
, 11412-11417.
12. Wang, J.C. and Dick, J. (2005) Cancer stem cells: lessons from leukemia.
Trends in Cell Biology
,
15
, 494-501.
13. Badiee, A., Eiken, H.G., Steen, V.M. and Løvlie, R. (2003) Evaluation of five different cDNA
labeling methods for microarrays using spike controls.
BMC Biotechnology
,
3
, 23.
14. Nygaard, V. and Hovig, E. (2006) Options available for profiling small samples: a review of sam-
ple amplification technology when combined with microarray profiling.
Nucleic Acids Research
,
34
, 996-1014. A helpful review of different amplification methods available for microarray
analysis.
15. Glanzer, J.G. and Eberwine, J.H. (2004) Expression profiling of small cellular samples in cancer:
less is more.
British Journal of Cancer
,
90
, 1111-1114. An excellent review on the need for and
methods of amplification in gene expression studies.
16. Kawasaki, E. (2004) Microarrays and the gene expression profile of a single cell.
Annals of the
New York Academy of Sciences
,
1020
, 92-100.
17. Wang, E., Miller, L.D., Ohnmacht, G.A.
et al
. (2000) High-fidelity mRNA amplification for gene
profiling.
Nature Biotechnology
,
18
, 457-459. One of the first examples showing the utility of
T7-amplification methods for spotted DNA arrays.
18. Puskas, L.G., Zvara, A., Hackler, L. and Van Hummelen, P.P (2002) RNA amplification results in
reproducible microarray data with slight ratio bias.
BioTechniques
,
32
, 1330-1334, 1336, 1338,
1340.
19. Saghizadeh, M., Brown, D.J., Tajbakhsh, J.
et al
. (2003) Evaluation of techniques using amplified
nucleic acid probes for gene expression profiling.
Biomolecular Engineering
,
20
, 97-106.
20. Schneider, J., Buness, A., Huber, W.
et al
. (2004) Systematic analysis of T7 RNA polymerase
based
in vitro
linear RNA amplification for use in microarray experiments.
BMC Genomics
,
5
, 29.
21. Wadenback, J., Clapham, D., Craig, D.
et al
. (2005) Comparison of standard exponential and
linear techniques to amplify small cDNA samples for microarrays.
BMC Genomics
,
6
, 61.
22. Schlingemann, J., Thuerigen, O., Ittrich, C.
et al
. (2005) Effective transcriptome amplification
for expression profiling on sense-oriented oligonucleotide microarrays.
Nucleic Acids Research
,
33
, e29.
23. Shearstone, J., Allaire, N.E., Campos-Rivera, J.
et al
. (2006) Accurate and precise transcrip-
tional profiles from 50 pg of total RNA or 100 flow-sorted primary lymphocytes.
Genomics
,
88
,
111-121.
24. Subkhankulova, T. and Livesey, F.J. (2006) Comparative evaluation of linear and exponential
amplification techniques for expression profiling at the single-cell level.
Genome Biology
,
7
, R18.
25. Wilson, C.L., Pepper, S.D., Hey, Y. and Miller, C.J. (2004) Amplification protocols introduce
systematic but reproducible errors into gene expression studies.
BioTechniques
,
36
, 498-506.
26. Baugh, L.R., Hill, A.A., Brown, E.L. and Hunter, C.P. (2001) Quantitative analysis of mRNA
amplification by in vitro transcription.
Nucleic Acids Research
,
29
, E29.
27. Choesmel, V., Foucault, F., Thiery, J.P. and Blin, N. (2004) Design of a real time quantitative PCR
assay to assess global mRNA amplification of small size specimens for microarray hybridisation.
Journal of Clinical Pathology
,
57
, 1278-1287.