Biomedical Engineering Reference
In-Depth Information
3. Babajide A, Farber R, Hofacker IL, Inman J, Lapedes AS, Stadler PF, 2001. Exploring protein
sequence space using knowledge-based potentials.
J Theor Biol
212
:35-46.
4. Babajide A, Hofacker IL, Sippl MJ, Stadler PF. 1997. Neutral networks in protein space: a
computational study based on knowledge-based potentials of mean force.
Folding Des
2
:261-
269.
5. Biebricher CK, Gardiner WC. 1997. Molecular evolution of RNA
in vitro
.
Biophys Chem
66
:179-192.
6. Blackburn E. 1999. Telomerase. In
The RNA world
, pp. 609-635. Ed. R Gesteland, T Cech, J
Atkins. Cold Spring Harbor Laboratory Press, New York.
7. Bosher JM, Labouesse M. 2000. RNA interference: genetic wand and genetic watchdog.
Na-
ture Cell Biol
2
:E31-E36.
8. Brown JW, The ribonuclease P database. 1999.
Nucleic Acids Res
27
:314-314.
9. Bruccoleri RE, Heinrich G. 1988. An improved algorithm for nucleic acid secondary structure
display.
Comput Appl Biosci
4
:167-173.
10. Chetouani F, Monestie P, Thebault P, Gaspin C, Michot B. 1997. ESSA: an integrated and
inteactive computer tool for analysing RNA structure.
Nucleic Acids Res
25
:3514-3522.
11. Cogoni C., Macino G. 2000. Post-transcriptional gene silencing across kingdoms.
Genes Dev
10
:638-643.
12. ten Dam EB, Pleij CW, Bosch L. 1990. RNA pseudoknots: translational frameshifting and
readthrough on viral RNAs.
Virus Genes
4
:121-135.
13. ten Dam EB, Pleij K, Draper D. 1992. Structural and functional aspects of RNA pseudoknots.
Biochemistry
31
:11665-11676.
14. ten Dam EB, Verlaan PW, Pleij CW. 1995. Analysis of the role of the pseudoknot component
in the SRV-1 gag-pro ribosomal frameshift signal: loop lengths and stability of the stem re-
gions.
RNA
1
:146-154.
15. Dandekar T, Hentze MW. Finding the hairpin in the haystack: searching for RNA motifs.
Trends Genet
11
:45-50.
16. Dayton ET, Konings DAM, Powell DM, Shapiro BA, and LB, Maizel JV, Dayton AI. 1992.
Extensive sequence-specific information throughout the CAR/RRE the target sequence of the
human immunodeficiency virus type 1 Rev protein.
J Virol
66
:1139-1151.
17. Denduangboripant J, Cronk QCB. 2001. Evolution and alignment of the hypervariable arm 1 of
Aeschynanthus
(Gesneriaceae) ITS2 nuclear ribosomal DNA.
Mol Phylog Evol
20
:163-172.
18. Doudna JA. 2000. Structural genomics of RNA.
Nature Struct Biol
7
:954-956.
19. Du Z, Holland JA, Hansen MR, Giedroc DP, Hoffman DW. 1997. Base-pairings within the
RNA pseudoknot associated with the simian retrovirus-1 gag-pro frameshift site.
J Mol Biol
270
:464-470.
20. Eddy SR. 2001. Non-coding RNA genes and the modern RNA world.
Nature Genet
2:919-
929.
21. Edmonds J. 1965. Maximum matching and a polyhedron with 0,1-vertices.
J Res Natl Bur
Stand
69B
:125-130.
22. Erdmann VA, Barciszewska MZ, Hochberg A, de Groot N, Barciszewski J. 2001. Regulatory
RNAs.
Cell Mol Life Sci
58
:960-977.
23. Erdmann VA, Szymanski M, Hochberg A. de Groot N, Barciszewski J. Collection of mRNA-
like non-coding RNAs.
Nucleic Acids Res
27
:192-195.
24. Felciano RM, Chen RO, Altmann RB. 1997. RNA Secondary strucutre as a reusable interface
to biological information resources.
Gene
190
:GC59-GC70.
25. Flamm C, Fontana W, and IH, Schuster P. 2000. RNA folding kinetics at elementary step
resolution.
RNA
6
:325-338.
26.
Flamm C, Hofacker IL, Stadler PF, Wolfinger MT. 2002. Barrier Trees of Degenerate Land-
scapes.
Z Phys Chem
216
:155-173.