Biomedical Engineering Reference
In-Depth Information
27. Fontana W, Stadler PF, Bornberg-Bauer EG, Griesmacher T, Hofacker IL, Tacker M, Tarazona
P, Weinberger ED, Schuster P. 1993. RNA folding landscapes and combinatory landscapes.
Phys Rev E
47
:2083-2099.
28. Fontana W, Konings DAM, Stadler PF, Schuster P. 1993. Statistics of RNA secondary struc-
tures.
Biopolymers
33
:1389-1404.
29. Fontana W, Schuster P. 1998. Continuity in evolution: on the nature of transitions.
Science
280
:1451-1455.
30. Fontana W, Schuster P. 1998. Shaping space: the possible and the attainable in RNA genotype-
phenotype mapping.
J Theor Biol
194
:491-515.
31. Franke A, Baker BS. 2000. Dosage compensation rox!
Curr Opin Cell Biol
12
:351-354.
32. Freier SM, Kierzek R, Jaeger JA, Sugimoto N, Caruthers MH, Neilson T, Turner DH. 1986.
Improved free-energy parameters for prediction of RNA duplex stability.
Proc Natl Acad Sci
USA
83
:9373-9377.
33. Gabow HN. 1973.
Implementations of algorithms for maximum matching on nonbipartite
graphs
. Stanford University, Department of Computer Science.
34. Gautheret D, Major F, Cedergren R. 1990. Pattern searching/alignment with RNA primary and
secondary structures: an effective descriptor for tRNA.
Comput Appl Biosci
6
:325-331.
35. Gavrilets S. 1997. Evolution and speciation on holey adaptive landscapes.
Trends Ecol Evol
12
:307-312.
36. Giegerich, R, Reeder, J. 2003.
From RNA folding to thermodynamic matching including pseu-
doknots
. Report 2003-03, Universität Bielefeld, Germany.
37. Gorodkin J, Knudsen B, Zwieb C, Samuelsson T. 2001. SRPDB (signal recognition particle
database)
Nucleic Acids Res
29
:169-170.
38. Gorodkin J, Heyer LJ, Stormo GD. 1997. Finding common sequences and structure motifs in a
set of RNA molecules. In
Proceedings of the ISMB97
, pp. 120-123. Ed. T Gaasterland, P
Karp, K Karplus, Ch Ouzounis, Ch Sander, A Valencia. AAAI Press, Menlo Park, CA.
39. Gorodkin J, Heyer LJ, Stormo GD. 1997. Finding the most significant common sequence and
structure motifs in a set of RNA sequences.
Nucleic Acids Res
25
:3724-3732.
40. Green MR. 1991. Biochemical mechanisms of constitutive and regulated pre-mRNA splicing.
Annu Rev Cell Biol
7
:559-599.
41. Griffiths-Jones S, Bateman A, Mhairi M, Khanna A, Eddy SR. 2003. Rfam: an RNA family
database.
Nucleic Acids Res
31
:439-441.
42. Grüner W, Giegerich R, Strothmann D, Reidys CM, Weber J, Hofacker IL, Stadler PF, Schus-
ter P. 1996. Analysis of RNA sequence structure maps by exhaustive enumeration. I. Neutral
networks.
Monatsh Chem
127
:355-374.
43. Grüner W, Giegerich R, Strothmann D, Reidys CM, Weber J, Hofacker IL, Stadler PF, Schus-
ter P. 1996. Analysis of RNA sequence structure maps by exhaustive enumeration. II. Struc-
tures of neutral networks and shape space covering.
Monatsh Chem
127
:375-389.
44. Gultyaev AP, van Batenburg FHD, Pleij CWA. 1999. An approximation of loop free energy
values of RNA H-pseudoknots.
RNA
5
:609-617.
45. Guru T. 2000. A silence that speaks volumes.
Nature
404
:804-808.
46. Gutell RR, Cannone JJ, Shang Z, Du Y, Serra MJ. 2000. A story: unpaired adenosine bases in
ribosomal RNA.
J Mol Biol
304
:335-354.
47. Gutell RR. 1993. Evolutionary characteristics of RNA: inferring higher-order structure from
patterns of sequence variation.
Curr Opin Struct Biol
3
:313-322.
48. The Genome Sequencing Consortium. 2001. Gene content of the human genome.
Nature
409
:860-921.
49.
Hammond SM, Caudy AA, Hannon GJ. 2001. Post-transcriptional gene silencing by double-
stranded RNA.
Nature Rev Genet
2
:110-119.
50.
Han K, Kim HJ. 1993. Prediction of common folding structures of homologous RNAs.
Nucleic
Acids Res
21
:1251-1257.