Current Analytical Methods of DNA Microarray Data - DNA Microarray Technology and Data Analysis in Cancer Research - page 34

Fig. 3.13. Volcano plots resulting from the contrasts of iterPLIER-processed data
for sample groups Mut_A versus B6 (top left), Mut_A versus Vector (top right), and
Vector versus B6 (bottom center).
3.4.2.1. Fs permutation p-value distribution
The distribution of Fs permutation p -values is shown in Figs. 3.10 and 3.11.
3.4.2.2. p- and q-value summary
RMA summary
Table 3.3 shows the number of differentially expressed probes at various
p - and q -value thresholds for the contrast using RMA-processed data.