Biomedical Engineering Reference
In-Depth Information
56. Reddy, V.S., Giesing, H.A., Morton, R.T., Kumar, A., Post, C.B., Brooks III, C.L., Johnson,
J.E.: Energetics of quasiequivalence: computational analysis of protein-protein interactions in
icosahedral viruses. Biophys. J. 74 (1), 546-558 (1998)
57. Shepherd, C.M., Borelli, I.A., Lander, G., Natarajan, P., Siddavanahalli, V., Bajaj, C., Johnson,
J.E., Brooks III, C.L., Reddy, V.S.: Viperdb: a relational database for structural virology.
Nucleic Acids Res. 34 , D386-D389. (2006)
58. Zlotnick, A., Aldrich, R., Johnson, J.M., Ceres, P., Young, M.J.: Mechanism of capsid
assembly for an icosahedral plant virus. Virology 277 , 450-456 (2000)
59. Casini, G.L., Graham, D., Heine, D., Garcea, R.L., Wu, D.L.: In vitro papillomavirus capsid
assembly analyzed by light scattering. Virology 325 , 320-327 (2004)
60. Zhang, T., Schwartz, R.: Simulation study of the contribution of oligomer/oligomer binding
to capsid assembly kinetics. Biophys. J. 90 , 57-64 (2006)
61. Hicks, S.D., Henley, C.L.: Irreversible growth model for virus capsid assembly. Phys. Rev. E
Stat. Nonlin. Soft. Matter Phys. 74 (3 Pt 1), 031912 (2006)
62. Alder, B.J., Wainwright, T.E.: Studies in molecular dynamics. I. General method. J. Chem.
Phys. 31 , 459-466 (1959)
63. Rapaport, D.C.: Molecular dynamics simulation of polymer chains with excluded volume.
J. Phys. A 11 , L213-L217 (1978)
64. Bellemans, A., Orban, J., Belle, D.V.: Molecular dynamics of rigid and non-rigid necklaces
of hard discs. Mol. Phys. 39 , 781-782 (1980)
65. Nguyen, H.D., Reddy, V.S., Brooks III, C.L. Invariant polymorphism in virus capsid assembly.
J. Am. Chem. Soc. 131 (7), 2606-14 (2009)
66. Sorger, P.K., Stockley, P.G., Harrison, S.C.: Structure and assembly of turnip crinkle virus.
ii. mechanism of reassembly in vitro. J. Mol. Biol. 191 (4), 639-658 (1986)
67. Earnshaw, W., King, J.: Structure of phage p22 coat protein aggregates formed in the absence
of the scaffolding protein. J. Mol. Biol. 126 , 721-747 (1978)
68. Bancroft, J.B., Bracker, C.E., Wagner, G.W.: Structures derived from cowpea chlorotic mottle
and brome mosaic virus protein. Virology 38 (2), 324-35 (1969)
69. Salunke, D.M., Caspar, D.L., Garcea, R.L.: Polymorphism in the assembly of polyomavirus
capsid protein vp1. Biophys. J. 56 (5), 887-900 (1989)
70. Kanesashi, S.N., Ishizu, K., Kawano, M.A., Han, S.I., Tomita, S., Watanabe, H., Kataoka, K.,
Handa, H.: Simian virus 40 vp1 capsid protein forms polymorphic assemblies in vitro. J. Gen.
Virol. 84 (Pt 7), 1899-905 (2003)
71. Zhao, Q., Guo, H.H., Wang, Y., Washabaugh, M.W., Sitrin, R.D.: Visualization of discrete
l1 oligomers in human papillomavirus 16 virus-like particles by gel electrophoresis with
coomassie staining. J. Virol. Methods 127 (2), 133-40 (2005)
72. Fu, C.Y., Morais, M.C., Battisti, A.J., Rossmann, M.G., Jr. Prevelige, P.E.: Molecular
dissection of o29 scaffolding protein function in an in vitro assembly system. J. Mol. Biol.
366 (4), 1161-1173 (2007)
73. Dong, X.F., Natarajan, P., Tihova, M., Johnson, J.E., Schneemann, A.: Particle polymorphism
caused by deletion of a peptide molecular switch in a auasiequivalent icosahedral virus.
J. Virol. 72 (7), 6024-6033 (1998)
74. Cusack, S., Oostergetel, G.T., Krijgsman, P.C., Mellema, J.E.: Structure of the top a-t
component of alfalfa mosaic virus. A non-icosahedral virion. J. Mol. Biol. 171 (2), 139-55
(1983)
75. Nguyen, H.D., Brooks III, C.L.: Generalized structural polymorphism in self-assembled viral
particles. Nano Lett. 8 , 4574-81 (2008)
76. Xie, Z., Hendrix, R.W.: Assembly in vitro of bacteriophage hk97 proheads. J. Mol. Biol.
253 (1), 74-85 (1995)
77. Duda, R.L., Hempel, J., Michel, H., Shabanowitz, J., Hunt, D., Hendrix, R.W.: Structural
transitions during bacteriophage hk97 head assembly. J. Mol. Biol. 247 (4), 618-635 (1995)
78. Wikoff, W.R., Liljas, L., Duda, R.L., Tsuruta, H., Hendrix, R.W., Johnson, J.E.: Topologically
linked protein rings in the bacteriophage hk97 capsid. Science 289 (5487), 2129-2133 (2000)
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