Biology Reference
In-Depth Information
13. Alvarez S, Hicks LM, Pandey S (2011) ABA-
dependent and -independent G-protein signal-
ing in Arabidopsis roots revealed through an
iTRAQ proteomics approach. J Proteome Res
10:3107-3122
14. Zhao Z, Stanley BA, Zhang W et al (2010)
ABA-regulated G protein signaling in
Arabidopsis guard cells: a proteomic perspec-
tive. J Proteome Res 9:1637-1647
15. Marsh E, Alvarez S, Hicks LM et al (2010)
Changes in protein abundance during powdery
mildew infection of leaf tissues of Cabernet
Sauvignon grapevine (Vitis vinifera L.).
Proteomics 10:2057-2064
16. Fan J, Chen C, Yu Q, Brlansky RH, Li C-G,
Gmitter FG Jr (2011) Comparative iTRAQ
proteome and transcriptome analyses of sweet
orange infected by “
Candidatus
Liberibacter
asiaticus”. Physiol Plant 143:235-245
17. Pang Q, Chen S, Dai S et al (2010) Comparative
proteomics of salt tolerance in Arabidopsis
thaliana and Thellungiella halophila. J Pro-
teome Res 9:2584-2599
18. Fukao Y, Ferjani A, Tomioka R et al (2011)
iTRAQ analysis reveals mechanisms of growth
defects due to excess zinc in Arabidopsis. Plant
Physiol 155:1893-1907
19. Jones AME, Bennett MH, Mansfi eld JW et al
(2006) Analysis of the defence phosphopro-
teome of Arabidopsis thaliana using differential
mass tagging. Proteomics 6:4155-4165
20. Nühse TS, Bottrill AR, Jones AME et al (2007)
Quantitative phosphoproteomic analysis of
plasma membrane proteins reveals regulatory
mechanisms of plant innate immune responses.
Plant J 51:931-940
21. Jones AME, Nühse TS (2011)
Phosphoproteomics using iTRAQ. In:
Dissmeyer N, Schnittger A (eds) Plant kinases.
Springer, New York, NY, pp 287-302
22. Dunkley TPJ, Hester S, Shadforth IP et al
(2006) Mapping the Arabidopsis organelle
proteome. Proc Natl Acad Sci USA 103:
6518-6523
23. Ow SY, Salim M, Noirel J, Evans C et al (2009)
iTRAQ underestimation in simple and complex
mixtures: “The Good, the Bad and the Ugly”.
J Proteome Res 8:5347-5355
24. Gan CS, Chong PK, Pham TK et al (2007)
Technical, experimental, and biological variations
in isobaric tags for relative and absolute quantita-
tion (iTRAQ). J Proteome Res 6:821-827
25. Wu WW, Wang G, Baek SJ et al (2006)
Comparative study of three proteomic quanti-
tative methods, DIGE, cICAT, and iTRAQ,
using 2D gel- or LC-MALDI TOF/TOF.
J Proteome Res 5:651-658
26. Elliott MH, Smith DS, Parker CE et al (2009)
Current trends in quantitative proteomics.
J Mass Spectrom 44:1637-1660
27. Olsen JV, Macek B, Lange O et al (2007)
Higher-energy C-trap dissociation for pep-
tide modifi cation analysis. Nat Methods 4:
709-712
28. Hurkman WJ, Tanaka CK (1986) Solubilization
of plant membrane proteins for analysis by two-
dimensional gel electrophoresis. Plant Physiol
81:802-806
29. Saravanan RS, Rose JK (2004) A critical evalu-
ation of sample extraction techniques for
enhanced proteomic analysis of recalcitrant
plant tissues. Proteomics 4:2522-2532
30. Lücker J, Laszczak M, Smith D, Lund ST
(2009) Generation of a predicted protein data-
base from EST data and application to iTRAQ
analyses in grape (Vitis vinifera cv. Cabernet
Sauvignon) berries at ripening initiation. BMC
Genomics 10:50
31. Mueller LN, Brusniak M-Y, Mani DR et al
(2008) An assessment of software solutions for
the analysis of mass spectrometry based quanti-
tative proteomics data. J Proteome Res 7:
51-61
32. Sellés-Marchart S, Luque I, Casado-Vela J et al
(2008) Proteomics of multigenic families
from species underrepresented in databases:
the case of loquat (Eriobotrya japonica Lindl.)
polyphenol oxidases. J Proteome Res 7:
4095-4106
33. Shevchenko A, Sunyaev S, Loboda A et al
(2001) Charting the proteomes of organisms
with unsequenced genomes by MALDI-
quadrupole time-of-fl ight mass and BLAST
homology searching. Anal Chem 73:
1917-1926
34. Grossman J, Fisher B, Baerenfaller K et al
(2007) A workfl ow to increase the detection
rate of proteins from unsequenced organisms
in high-throughput proteomics experiments.
Proteomics 7:4245-4254
35. Gehlenborg N, O'Donoghue SI, Baliga NS,
Goesmann A et al (2010) Visualization of
omics data for systems biology. Nat Methods
7(3 Suppl):S56-S68
