Biology Reference
In-Depth Information
31. Zhang F, Cong L, Lodato S, et al. Efficient construction of sequence-specific TAL effectors for modulating
mammalian transcription.
Nat Biotechnol
. 2011;29:149
153.
32. Liu CC, Qi L, Yanofsky C, Arkin AP. Regulation of transcription by unnatural amino acids.
Nat Biotechnol
.
2011;29:164
168.
33. Liu CC, Schultz PG. Adding new chemistries to the genetic code.
Annu Rev Biochem
. 2010;79:413
444.
34. Qi L, Lucks JB, Liu CC, Mutalik VK, Arkin AP. Engineering naturally occurring trans-acting non-coding RNAs
to sense molecular signals.
Nucleic Acids Res
. 2012;40:5775
5786.
35.
554.
36. Salis HM, Mirsky EA, Voigt CA. Automated design of synthetic ribosome binding sites to control protein
expression.
Nat Biotechnol
. 2009;27:946
Isaacs FJ, Dwyer DJ, Collins JJ. RNA synthetic biology.
Nat Biotechnol
. 2006;24:545
950.
37.
Isaacs FJ, Dwyer DJ, Ding C, et al. Engineered riboregulators enable post-transcriptional control of gene
expression.
Nat Biotechnol
. 2004;22:841
847.
38. Callura JM, Cantor CR, Collins JJ. Genetic switchboard for synthetic biology applications.
Proc Natl Acad
Sci USA
. 2012;109:5850
5855.
39. Mutalik VK, Qi L, Guimaraes JC, Lucks JB, Arkin AP. Rationally designed families of orthogonal RNA regulators
of translation.
Nat Chem Biol
. 2012;8:447
454.
40. Dixon N, Duncan JN, Geerlings T, et al. Reengineering orthogonally selective riboswitches.
Proc Natl Acad
Sci USA
. 2010;107:2830
2835.
41. Dixon N, Robinson CJ, Geerlings T, et al. Orthogonal riboswitches for tuneable coexpression in bacteria.
Angew
Chem
. 2012;51:3620
3624.
42. Win MN, Smolke CD. Higher-order cellular information processing with synthetic RNA devices.
Science
.
2008;322:456
460.
43. Khalil AS, Collins JJ. Synthetic biology: applications come of age.
Nat Rev Genet
. 2010;11:367
379.
44. Mutalik VK, Guimaraes JC, Cambray G, et al. Composition and quality of irregular genetic elements
controlling transcription and translation.
Nature Methods
2012; in press.
45. Liu CC, Qi L, Lucks JB, et al. A converter from translational to transcriptional control. 2012; doi:10.1038/
nmeth.2184.
46. Anderson JC, Voigt CA, Arkin AP. Environmental signal integration by a modular AND gate.
Mol Syst Biol
.
2007;3:133.
47. Yokobayashi Y, Weiss R, Arnold FH. Directed evolution of a genetic circuit.
Proc Natl Acad Sci USA
.
2002;99:16587
78
16591.
48. McAdams HH, Arkin A. Towards a circuit engineering discipline.
Curr Biol
. 2000;10:R318
320.
49. Gorgens JF, van Zyl WH, Knoetze JH, Hahn-Hagerdal B. The metabolic burden of the PGK1 and ADH2
promoter systems for heterologous xylanase production by
Saccharomyces cerevisiae
in defined medium.
Biotechnol Bioeng
. 2001;73:238
245.
50. Martin VJ, Pitera DJ, Withers ST, Newman JD, Keasling JD. Engineering a mevalonate pathway in
Escherichia
coli
for production of terpenoids.
Nat Biotechnol
. 2003;21:796
802.
51. Esvelt KM, Carlson JC, Liu DR. A system for the continuous directed evolution of biomolecules.
Nature
.
2011;472:499
503.
52. Gabrielsson J, Lindberg NO, Lundstedt T. Multivariate methods in pharmaceutical applications.
J Chemometr
.
2002;16:141
160.
53. Hibbert DB. Experimental design in chromatography: a tutorial review.
J Chromatogr B Analyt Technol Biomed
Life Sci
. 2012;910:2
13.
54. Bora N, Bawa Z, Bill RM, Wilks MD. The implementation of a design of experiments strategy to increase
recombinant protein yields in yeast (review).
Methods Mol Biol
. 2012;866:115
127.
55. Flaherty P, Jordan MI, Arkin AP. Robust design of biological experiments. In: Weiss Y, Schoelkopf B, Platt
J, eds.
Advances in Neural Information Processing Systems (NIPS)
. Cambridge, Massachusetts: MIT Press; 2006.
56. Box GEP, Wilson KB. On the experimental attainment of optimum conditions.
J R Stat Soc Ser B-Stat Methodol
.
1951;13:1
45.
57. Arkin A. Setting the standard in synthetic biology.
Nat Biotechnol
. 2008;26:771
774.
58. Canton B, Labno A, Endy D. Refinement and standardization of synthetic biological parts and devices.
Nat
Biotechnol
. 2008;26:787
793.
59. Clancy K, Voigt CA. Programming cells: towards an automated
Genetic Compiler.
Curr Opin Biotechnol
.
'
'
2010;21:572
581.
