Biology Reference
In-Depth Information
References
1. Keasling JD. Manufacturing molecules through metabolic engineering.
Science
. 2010;330:1355
1358.
2. Lee SY, Kim HU, Park JH, Park JM, Kim TY. Metabolic engineering of microorganisms: general strategies and
drug production.
Drug Discov Today
. 2009;14:78
88.
3. Ruder WC, Lu T, Collins JJ. Synthetic biology moving into the clinic.
Science
. 2011;333:1248
1252.
4. Zhao H, Chen W. Chemical biotechnology: microbial solutions to global change. Editorial overview.
Curr Opin
Biotechnol
. 2008;19:541
543.
5. Endy D. Foundations for engineering biology.
Nature
. 2005;438:449
453.
6. Cardinale S, Arkin AP. Contextualizing context for synthetic biology.
Biotechnol J
. 2012;7:856
866.
doi:10.1002/biot.201200085.
7. Carothers JM, Goler JA, Juminaga D, Keasling JD. Model-driven engineering of RNA devices to quantitatively
program gene expression.
Science
. 2011;334:1716
1719.
8. de Smit MH, van Duin J. Secondary structure of the ribosome binding site determines translational efficiency: a
quantitative analysis.
Proc Natl Acad Sci USA
. 1990;87:7668
7672.
9. Kudla G, Murray AW, Tollervey D, Plotkin JB. Coding-sequence determinants of gene expression in
Escherichia
coli
.
Science
. 2009;324:255
258.
10. Salis HM. The ribosome binding site calculator.
Methods Enzymol
. 2011;498:19
42.
11. Babiskin AH, Smolke CD. A synthetic library of RNA control modules for predictable tuning of gene expression
in yeast.
Mol Syst Biol
. 2011;7:471.
12. Davis JH, Rubin AJ, Sauer RT. Design, construction and characterization of a set of insulated bacterial
promoters.
Nucleic Acids Res
. 2011;39:1131
1141.
13. Qi L, Haurwitz RE, Shao W, Doudna JA, Arkin AP. Predictable engineering of prokaryotic gene expression.
2012;doi:10.1038/nbt.2355.
14. Smolke CD, Carrier TA, Keasling JD. Coordinated, differential expression of two genes through directed mRNA
cleavage and stabilization by secondary structures.
Appl Environ Microbiol
. 2000;66:5399
5405.
15. Tamsir A, Tabor JJ, Voigt CA. Robust multicellular computing using genetically encoded NOR gates and
chemical
215.
16. Cobb RE, Sun N, Zhao H. Directed evolution as a powerful synthetic biology tool.
Methods
. 2012; Epub ahead
of print
17. Pfleger BF, Pitera DJ, Smolke CD, Keasling JD. Combinatorial engineering of intergenic regions in operons
tunes expression of multiple genes.
Nat Biotechnol
. 2006;24:1027
'
wires.
'
Nature
. 2011;469:212
77
1032.
18. Wang HH, Isaacs FJ, Carr PA, et al. Programming cells by multiplex genome engineering and accelerated
evolution.
Nature
. 2009;460:894
898.
19. Alper H, Fischer C, Nevoigt E, Stephanopoulos G. Tuning genetic control through promoter engineering.
Proc Natl Acad Sci USA
. 2005;102:12678
12683.
20. Blount BA, Weenink T, Vasylechko S, Ellis T. Rational diversification of a promoter providing fine-tuned
expression and orthogonal regulation for synthetic biology.
PloS one
. 2012;7:e33279.
21. Jensen PR, Hammer K. The sequence of spacers between the consensus sequences modulates the strength of
prokaryotic promoters.
Appl Environ Microbiol
. 1998;64:82
87.
22. Elowitz MB, Leibler S. A synthetic oscillatory network of transcriptional regulators.
Nature
. 2000;403:335
338.
23. Purnick PE, Weiss R. The second wave of synthetic biology: from modules to systems.
Nat Rev Mol Cell Biol
.
2009;10:410
422.
24. Lucks JB, Qi L, Mutalik VK, Wang D, Arkin AP. Versatile RNA-sensing transcriptional regulators for engineering
genetic networks.
Proc Natl Acad Sci USA
. 2011;108:8617
8622.
25. Lucks JB, Qi L, Whitaker WR, Arkin AP. Toward scalable parts families for predictable design of biological
circuits.
Curr Opin Microbiol
. 2008;11:567
573.
26. Zhan J, Ding B, Ma R, et al. Develop reusable and combinable designs for transcriptional logic gates.
Mol Syst
Biol
. 2010;6:388.
27. Mandell JG, Barbas CF, III. Zinc finger tools: custom DNA-binding domains for transcription factors and
nucleases.
Nucleic Acids Res
. 2006;34:W516
523.
28. Gonzalez B, Schwimmer LJ, Fuller RP, et al. Modular system for the construction of zinc-finger libraries and
proteins.
Nat Protoc
. 2010;5:791
810.
29. Blancafort P, Magnenat L, Barbas CF, III. Scanning the human genome with combinatorial transcription factor
libraries.
Nat Biotechnol
. 2003;21:269
274.
30. Boch J, Scholze H, Schornack S, et al. Breaking the code of DNA binding specificity of TAL-type III effectors.
Science
. 2009;326:1509
1512.
