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64. Gonzalez-Lergier J, Broadbelt LJ, Hatzimanikatis V. Theoretical considerations and computational analysis of
the complexity in polyketide synthesis pathways.
J Am Chem Soc
. 2005;127:9930
9938.
65. Rodrigo G, Carrera J, Prather KJ, Jaramillo A. DESHARKY: automatic design of metabolic pathways for optimal
cell growth.
Bioinformatics
. 2008;24:2554
2556.
66. May M. Engineering a new business.
Nat Biotechnol
. 2009;27:1112
1120.
67. Stemmer WP, Crameri A, Ha KD, Brennan TM, Heyneker HL. Single-step assembly of a gene and entire
plasmid from large numbers of oligodeoxyribonucleotides.
Gene
. 1995;164:49
53.
68. Smith HO, Hutchison 3rd CA, Pfannkoch C, Venter JC. Generating a synthetic genome by whole genome
assembly: phiX174 bacteriophage from synthetic oligonucleotides.
Proc Natl Acad Sci USA
.
2003;100:15440
15445.
69. Engler C, Kandzia R, Marillonnet S. A one pot, one step, precision cloning method with high throughput
capability.
PLoS One
. 2008;3:e3647.
70. Gibson DG, Young L, Chuang RY, Venter JC, Hutchison 3rd CA, Smith HO. Enzymatic assembly of DNA
molecules up to several hundred kilobases.
Nat Methods
. 2009;6:343
345.
71. Li MZ, Elledge SJ. Harnessing homologous recombination
in vitro
to generate recombinant DNA via SLIC.
Nat Methods
. 2007;4:251
256.
72. Quan J, Tian J. Circular polymerase extension cloning of complex gene libraries and pathways.
PLoS One
.
2009;4:e6441.
73. Reisinger SJ, Patel KG, Santi DV. Total synthesis of multi-kilobase DNA sequences from oligonucleotides.
Nat Protoc
. 2006;1:2596
2603.
74. Shao Z, Zhao H. DNA assembler, an
in vivo
genetic method for rapid construction of biochemical pathways.
Nucleic Acids Res
. 2009;37:e16.
75. Gibson DG, Benders GA, Andrews-Pfannkoch C, et al. Complete chemical synthesis, assembly, and cloning
of a
Mycoplasma genitalium
genome.
Science
. 2008;319:1215
1220.
76. Endy D. Foundations for engineering biology.
Nature
. 2005;438:449
453.
77. Knight T. Idempotent vector design for standard assembly of biobricks.
MIT Synthetic Biology Working Group
Technical Reports
; 2003.
78. Wingler LM, Cornish VW. Reiterative recombination for the
in vivo
assembly of libraries of multigene
pathways.
Proc Natl Acad Sci USA
. 2011;108:15135
15140.
79. Shao Z, Luo Y, Zhao H. Rapid characterization and engineering of natural product biosynthetic pathways via
DNA assembler.
Mol Biosyst
. 2011;7:1056
202
1059.
80. Purnick PE, Weiss R. The second wave of synthetic biology: from modules to systems.
Nat Rev Mol Cell Biol
.
2009;10:410
422.
81. Rappe MS, Giovannoni SJ. The uncultured microbial majority.
Annu Rev Microbiol
. 2003;57:369
394.
82. Hugenholtz P, Goebel BM, Pace NR. Impact of culture-independent studies on the emerging phylogenetic view
of bacterial diversity.
J Bacteriol
. 1998;180:4765
4774.
83. Handelsman J, Rondon MR, Brady SF, Clardy J, Goodman RM. Molecular biological access to the chemistry of
unknown soil microbes: a new frontier for natural products.
Chem Biol
. 1998;5:R245
249.
84. Banik JJ, Brady SF. Recent application of metagenomic approaches toward the discovery of antimicrobials and
other bioactive small molecules.
Curr Opin Microbiol
. 2010;13:603
609.
85. Brady SF, Clardy J. Cloning and heterologous expression of isocyanide biosynthetic genes from environmental
DNA.
Angew Chem Int Ed Engl
. 2005;44:7063
7065.
86. Brady SF, Clardy J. Long-chain N-acyl amino acid antibiotics isolated from heterologously expressed
environmental DNA.
J Am Chem Soc
. 2000;122:12903
12904.
87. Lim HK, Chung EJ, Kim JC, et al. Characterization of a forest soil metagenome clone that confers indirubin
and indigo production on
Escherichia coli
.
Appl Environ Microbiol
. 2005;71:7768
7777.
88. Torsvik V, Goksoyr J, Daae FL. High diversity in DNA of soil bacteria.
Appl Environ Microbiol
. 1990;56:782
787.
89. Gillespie DE, Brady SF, Bettermann AD, et al. Isolation of antibiotics turbomycin A and B from a metagenomic
library of soil microbial DNA.
Appl Environ Microb
. 2002;68:4301
4306.
90. Brady SF, Chao CJ, Handelsman J, Clardy J. Cloning and heterologous expression of a natural product
biosynthetic gene cluster from eDNA.
Org Lett
. 2001;3:1981
1984.
91. MacNeil IA, Tiong CL, Minor C, et al. Expression and isolation of antimicrobial small molecules from soil
DNA libraries.
J Mol Microb Biotech
. 2001;3:301
308.
92. Wang GYS, Graziani E, Waters B, et al. Novel natural products from soil DNA libraries in a streptomycete host.
Org Lett
. 2000;2:2401
2404.
93. Soldati M, Fioretti A, Ghione M. Cytotoxicity of pederin and some of its derivatives on cultured mammalian
cells.
Experientia
. 1966;22:176
178.
