EGTA (ethyleneglycol bis(b-aminoethyl ether)-N,N,N′,N′-tetraacetic acid) (Molecular Biology)

EGTA is a chelating agent widely used to control the concentration oftmp32C-18_thumbcations in biological solutions (see also -Tetraacetic Acid)). Its structure is given in Figure 1. EGTA bindstmp32C-19_thumb fold more strongly thantmp32C-20_thumbwhich makes it useful to controltmp32C-21_thumblevels in the presence of physiological concentrations oftmp32C-22_thumb(1-3). The binding of cations by EGTA is pH-dependent; at low pH the carboxylate moieties will be protonated, dramatically lowering the cation affinity. The high selectivity of EGTA fortmp32C-23_thumbovertmp32C-24_thumbis readily explained by the structure of their respective complexes (Fig. 2, see top of next page) (4, 5). While EGTA fully wraps aroundtmp32C-25_thumbin a very stable octadentate complex, it cannot similarly satisfy the more stringent binding requirements of the smallertmp32C-26_thumbThe preference oftmp32C-27_thumbfor oxygen ligands over nitrogen ligands is so great that it binds to EGTA via the carboxylate groups only. The remaining positions in the ligand shell are filled by water. Although these complexes can be crystallized and their structure determined, they are very dynamic in solution. NMR analysis of thetmp32C-28_thumbcomplex indicates that the carboxylate moieties interchange positions rapidly on the NMR time scale, and inversion at the nitrogen atoms is observed at elevated temperatures (5), which further indicates that the complex is very dynamic. The great stability of thetmp32C-29_thumbcomplex comes from the fact that all ligands are provided by a single molecule, specifically, the stability constants have a very high entropic contribution.


Figure 1. Molecular structure of EGTA.

Molecular structure of EGTA.

Figure 2. Three-dimensional structures of complexes of EGTA with tmp32C-31_thumb

Three-dimensional structures of complexes of EGTA

EGTA as the free acid is a white crystalline powder and has a molecular weight of 340.35 Da. The affinities of EDTA and EGTA for several cations are compared in Table 1(6).

Table 1. Comparison of Affinities of EDTA and EGTA for Various Cations3

Metal Ion

tmp32C-33 tmp32C-34
tmp32C-35

8.64

5.3

tmp32C-36

11.0

10.9

tmp32C-37

16.4

12.6

tmp32C-38

16.4

16.5

a The logarithms of their association constantstmp32C-39are compared at pH 7.0, 25°C,and 0.1 M ionic strength (6)

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