Biology Reference
In-Depth Information
Fig. 10. SPHARM-MAT software tool for surface modeling and analysis. (
a
) SPHARM-MAT interface. (
b
-
d
) Sample data:
original surface (
b
) can be described by multi-resolution SPHARM models (
c
-
d
) .
software tools for explaining how to implement these pipelines:
(1) Amira and FreeSurfer can be used for segmentation and then
followed by volumetric analysis, (2) SPM can be used for VBM
studies, and (3) SPHARM-MAT and SurfStat can be used together
for SBM studies.
Many other comprehensive software packages for analyzing
3D neuroanatomical images, such as the 3D slicer and Analyze
(Table
3
) exist. The objective of this section was to provide readers
with basic ideas and procedures that underlie the analysis of 3D
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