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Fig. 8.11 Stability of silanols toward self condensation is structure dependent
Fig. 8.12 Silanediol protease inhibitors
Three silanediol protease inhibitors are shown in Fig. 8.12 , in order of increasing
complexity: the C 2 symmetric 44 has identical organic substituents on the silandiol,
silanediol 46 has two different organic structures on the silicon and 48 has very
different structures on each side of the silanediol group, each with stereochemistry.
The symmetry of 44 matches the (unusual!) C 2 symmetric HIV protease, and was
modeled after the corresponding carbinol 45 reported by Merck [ 47 ]. Testing of 44 ,
45 and the commercial HIV protease inhibitor indinavir (not shown) found them to in-
hibit the enzyme to a similar degree, with K i values of 2.7 nM, 0.38 nM and 0.37 nM,
respectively [ 48 ]. In addition, IC 90 values for protection of whole cells against HIV
infection gave parallel values, indicating that they all penetrated cell membranes to
the same degree, thereby demonstrating the drug-like properties of silanediol 44 .
Phosphinic acid 47 was the starting point for design of silanediol 46 , two struc-
tures that inhibit the metalloprotease thermolysin [ 49 ]. Compounds 46 and 47 have
thermolysin inhibition K i values of 41 nM and 10 nM, respectively. The Cbz group
on the amine of 47 was replaced by a dihydrocinnamoyl group in 46 after the dis-
covery that a Cbz group did not withstand the strongly acidic conditions used to
deprotect the silanediol precursor (see below) [ 50 ]. A crystal structure of 46 bound
to the active site of thermolysin was determined by Juers and Matthews and showed
the anticipated interaction of the silanediol with the active site zinc ion [ 51 ].
 
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