Biology Reference
In-Depth Information
18. Sneath PHA, Sokal RR (1973) Numerical
taxonomy. The principles and practice of
numerical classification. Freeman, San Fran-
cisco, CA
19. Barney B (2011) OpenMP tutorial
20. Thompson JD, Koehl P, Ripp R, Poch O
(2005) BAliBASE 3.0: latest developments of
the multiple sequence alignment benchmark.
Proteins 61(1):127-136
21. Van Walle I, Lasters I, Wyns L (2004) Align-
m—a new algorithm for multiple alignment of
highly divergent
22. Raghava GPS, Searle SMJ, Audley PC, Barber
JD, Barton GJ (2003) OXBench: a benchmark
for evaluation of proteinmultiple sequence align-
ment accuracy. BMC Bioinformatics 4(1):47
23. Thompson JD, Plewniak F, Poch O (1999) A
comprehensive comparison of multiple
sequence alignment programs. Nucleic Acids
Res 27(13):2682-2690
24. Deng X, Cheng J (2011) MSACompro: pro-
tein multiple sequence alignment using pre-
dicted
secondary
structure,
solvent
accessibility,
and residue-residue
contacts.
sequences. Bioinformatics
BMC Bioinformatics 12:472
20(9):1428-1435