Biomedical Engineering Reference
In-Depth Information
Table 4.12 Linear predictor ranking by MSE for gene CycB ( x 9 ) in mutated network (Top 10
predictors shown), correct predictor is x 6 , x 7
Rank
1 input
2 inputs
3 inputs
4 inputs
Predictor
MSE
Predictor
MSE
Predictor
MSE
Predictor
MSE
1
x 7
0.1238
x 6 , x 7
0.0241
x 6 , x 7 , x 8
0.0202
x 3 , x 6 , x 7 , x 8
0.0176
2
x 6
0.1502
x 5 , x 7
0.0813
x 5 , x 6 , x 7
0.0401
x 4 , x 6 , x 7 , x 8
0.0182
3
x 3
0.2220
x 1 , x 7
0.0957
x 1 , x 6 , x 7
0.0429
x 1 , x 6 , x 7 , x 8
0.0189
4
x 8
0.2506
x 7 , x 8
0.0995
x 4 , x 6 , x 7
0.0494
x 5 , x 6 , x 7 , x 8
0.0204
5
x 4
0.2652
x 3 , x 7
0.1002
x 3 , x 6 , x 7
0.0520
x 4 , x 5 , x 6 , x 7
0.0206
6
x 5
0.2716
x 4 , x 7
0.1064
x 2 , x 6 , x 7
0.0531
x 3 , x 5 , x 6 , x 7
0.0207
7
x 2
0.2792
x 3 , x 6
0.1096
x 2 , x 3 , x 7
0.0605
x 2 , x 6 , x 7 , x 8
0.0207
8
x 1
0.2884
x 6 , x 8
0.1165
x 3 , x 4 , x 6
0.0634
x 3 , x 4 , x 6 , x 7
0.0208
9
x 4 , x 6
0.1211
x 1 , x 7 , x 8
0.0657
x 1 , x 5 , x 6 , x 7
0.0208
10
x 2 , x 7
0.1264
x 5 , x 7 , x 8
0.0660
x 1 , x 3 , x 6 , x 7
0.0216
Table 4.13 Sigmoid predictor ranking by MSE for gene Rb ( x 2 ) in mutated network (Top 10
predictors shown), correct predictor is x 1 , x 4 , x 5 , x 9
Rank
1 input
2 inputs
3 inputs
4 inputs
Predictor
MSE
Predictor
MSE
Predictor
MSE
Predictor
MSE
1
x 1
0.2722
x 1 , x 4
0.1244
x 1 , x 4 , x 9
0.0404
x 1 , x 4 , x 7 , x 9
0.04035
2
x 8
0.2815
x 5 , x 8
0.1475
x 1 , x 3 , x 4
0.0646
x 1 , x 4 , x 8 , x 9
0.04050
3
x 7
0.3732
x 1 , x 3
0.1503
x 1 , x 4 , x 5
0.0673
x 1 , x 4 , x 5 , x 9
0.04076
4
x 6
0.3899
x 1 , x 5
0.1534
x 1 , x 3 , x 6
0.0745
x 1 , x 4 , x 6 , x 9
0.04073
5
x 3
0.3901
x 5 , x 6
0.1571
x 1 , x 3 , x 5
0.0922
x 1 , x 3 , x 4 , x 5
0.05836
6
x 5
0.3923
x 1 , x 6
0.1583
x 1 , x 5 , x 9
0.0926
x 1 , x 3 , x 4 , x 8
0.06408
7
x 9
0.4013
x 8 , x 9
0.1623
x 1 , x 6 , x 9
0.0951
x 1 , x 3 , x 4 , x 9
0.06436
8
x 4
0.4068
x 7 , x 8
0.1656
x 1 , x 4 , x 8
0.0951
x 1 , x 3 , x 4 , x 7
0.06441
9
x 1 , x 8
0.1689
x 3 , x 4 , x 9
0.0954
x 1 , x 3 , x 4 , x 6
0.06525
10
x 3 , x 6
0.1774
x 1 , x 4 , x 6
0.0982
x 1 , x 4 , x 5 , x 7
0.06658
Table 4.14 Sigmoid predictor ranking by MSE for gene E 2 F ( x 3 ) in mutated network (Top 10
predictors shown), correct predictor is x 2 , x 5 , x 9
Rank
1 input
2 inputs
3 inputs
4 inputs
Predictor
MSE
Predictor
MSE
Predictor
MSE
Predictor
MSE
1
x 2
0.2993
x 2 , x 5
0.0591
x 2 , x 5 , x 9
0.0064
x 2 , x 5 , x 7 , x 9
0.0058
2
x 7
0.3034
x 2 , x 9
0.1210
x 2 , x 5 , x 6
0.0592
x 2 , x 5 , x 8 , x 9
0.0060
3
x 1
0.3600
x 2 , x 7
0.1552
x 2 , x 5 , x 8
0.0694
x 2 , x 5 , x 6 , x 9
0.0060
4
x 5
0.3627
x 1 , x 2
0.1784
x 2 , x 5 , x 7
0.0698
x 1 , x 2 , x 5 , x 9
0.0061
5
x 4
0.3699
x 5 , x 7
0.1797
x 1 , x 2 , x 5
0.0851
x 2 , x 4 , x 5 , x 9
0.0261
6
x 9
0.4052
x 7 , x 9
0.1840
x 2 , x 4 , x 5
0.0857
x 1 , x 2 , x 5 , x 7
0.0291
7
x 8
0.4236
x 5 , x 6
0.1938
x 1 , x 2 , x 7
0.0871
x 2 , x 4 , x 5 , x 7
0.0555
8
x 6
0.4286
x 4 , x 7
0.1938
x 5 , x 7 , x 9
0.0983
x 2 , x 4 , x 5 , x 8
0.0572
9
x 5 , x 8
0.1985
x 1 , x 2 , x 6
0.1138
x 2 , x 4 , x 5 , x 6
0.0580
10
x 4 , x 5
0.2099
x 2 , x 4 , x 9
0.1211
x 1 , x 2 , x 5 , x 8
0.0588
 
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