Biology Reference
In-Depth Information
26. Selby CP, Sancar A. Structure and function of transcription-repair coupling factor II. Catalytic
properties.
J Biol Chem
1995;
:4890-5.
27. Savery NJ. The molecular mechanism of transcription-coupled DNA repair.
Trends Microbiol
2007;
270
:326-33.
28. Deaconescu AM, Chambers AL, Smith AJ, Nickels BE, Hochschild A, Savery NJ, et al.
Structural basis for bacterial transcription-coupled DNA repair.
Cell
2006;
15
:507-20.
29. Butland G, Peregrin-Alvarez JM, Li J, Yang W, Yang X, Canadien V, et al. Interaction network
containing conserved and essential protein complexes
124
in
Escherichia coli
.
Nature
:531-7.
30. Roberts J, Park J-SS. Mfd, the bacterial transcription repair coupling factor: translocation,
repair and termination.
Curr Opin Microbiol
2004;
2005;
433
:120-5.
31. Park J-SS, Roberts JW. Role of DNA bubble rewinding in enzymatic transcription termination.
Proc Natl Acad Sci USA
2006;
7
:4870-5.
32. Westblade LF, Campbell EA, Pukhrambam C, Padovan JC, Nickels BE, Lamour V, et al.
Structural basis for the bacterial transcription-repair coupling factor/RNA polymerase inter-
action.
Nucleic Acids Res
2010;
103
:8357-69.
33. Trautinger BW, Jaktaji RP, Rusakova E, Lloyd RG. RNA polymerase modulators and DNA
repair activities resolve conflicts between DNA replication and transcription.
Mol Cell
2005;
38
:247-58.
34. Pomerantz RT, O'Donnell M. Direct restart of a replication fork stalled by a head-on RNA
polymerase.
Science
2010;
19
:590-2.
35. Dutta D, Shatalin K, Epshtein V, Gottesman ME, Nudler E. Linking RNA polymerase back-
tracking to genome instability in
E. coli
.
DNA Repair (Amst)
2011;
327
:533-43.
36. Murphy MN, Gong P, Ralto K, Manelyte L, Savery NJ, Theis K. An N-terminal clamp restrains
the motor domains of the bacterial transcription-repair coupling factor Mfd.
Nucleic Acids Res
2009;
146
:6042-53.
37. Chambers AL, Smith AJ, Savery NJ. A DNA translocation motif in the bacterial transcription-
repair coupling factor, Mfd.
Nucleic Acids Res
2003;
37
:6409-18.
38. Smith AJ, Szczelkun MD, Savery NJ. Controlling the motor activity of a transcription-repair
coupling factor: autoinhibition and the role of RNA polymerase.
Nucleic Acids Res
2007;
31
35
:
1802-11.
39. Manelyte L, Kim Y-IT, Smith AJ, Smith RM, Savery NJ. Regulation and rate enhancement
during transcription-coupled DNA repair.
Mol Cell
2010;
:714-24.
40. Srivastava DB, Darst SA. Derepression of bacterial transcription-repair coupling factor is
associated with a profound conformational change.
J Mol Biol
2011;
40
:275-84.
41. Epshtein V, Nudler E. Cooperation between RNA polymerase molecules in transcription
elongation.
Science
2003;
406
:801-5.
42. Epshtein V, Toulme F, Rahmouni AR, Borukhov S, Nudler E. Transcription through the
roadblocks: the role of RNA polymerase cooperation.
EMBO J
2003;
300
:4719-27.
43. Orren DK, Sancar A. The (A)BC excinuclease of
Escherichia coli
has only the UvrB and UvrC
subunits in the incision complex.
Proc Natl Acad Sci USA
1989;
22
:5237-41.
44. Lin JJ, Sancar A. (A)BC excinuclease: the
Escherichia coli
nucleotide excision repair enzyme.
Mol Microbiol
1992;
86
:2219-24.
45. Malta E, Moolenaar GF, Goosen N. Dynamics of the UvrABC nucleotide excision repair
proteins analyzed by fluorescence resonance energy transfer.
Biochemistry
2007;
6
:9080-8.
46. Kad NM, Wang H, Kennedy GG, Warshaw DM, Van Houten B. Collaborative Dynamic DNA
Scanning by Nucleotide Excision Repair Proteins Investigated by Single-Molecule Imaging of
Quantum-Dot-Labeled Proteins.
Mol Cell
2010;
46
:702-13.
47. Pakotiprapha D, Liu Y, Verdine GL, Jeruzalmi D. A structural model for the damage-sensing
complex in bacterial nucleotide excision repair.
J Biol Chem
2009;
37
:12837-44.
284