Biomedical Engineering Reference
In-Depth Information
population of cells has been recently implemented; it is another example of
complex cellular behavior besides that encountered in genetic circuits able to shape
intracellular noise, generate designed patterns, counting cellular events, and so on
[see Danino et al. ( 2010 )] and the references therein). The collective synchronization
is based on placing genes involved in quorum sensing machines and extracted
from Bacillus Thurigensis and Vibrio fischeri , under the control of gene promoters.
These genes generate synchronized oscillations in the population of Escherichia
coli placed in a microfluidic device. These oscillations are robust, persistent, and
fast, with periods as short as 13 min. The oscillation period depends on temperature,
media source, and concentration of inducers in the solution [for details, see Stricker
et al. ( 2008 )]. It was observed that almost every E. coli cell oscillates and that the
oscillatory phase is inherited by daughter cells.
References
Adleman L (1994) Molecular computation of solutions to combinatorial problems. Science
266:1021-1024
Ashkenasy G, Ghadiri MR (2004) Boolean logic functions of a synthetic peptide network. J Am
Chem Soc 126:11140-11141
Ben-Jacob E, Hermon Z, Caspi S (1999) DNA transistor and quantum bit element: realization of
nano-biomolecular logical devices. Phys Lett A 263:199-202
Benenson Y, Paz-Elizur T, Adar R, Keinan E, Livneh Z, Shapiro E (2001) Programmable and
autonomous computing machine made of biomolecules. Nature 414:430-434
Benenson Y, Adar R, Paz-Elizur T, Livneh Z, Shapiro E (2003) DNA molecule provides a
computing machine with both data and fuel. Proc Natl Acad Sci USA 100:2191-2196
Benenson Y, Gil B, Ben-Dor U, Adar R, Shapiro E (2004) An autonomous molecular computer for
logical control of gene expression. Nature 429:423-429
Choi J-W, Nam Y-S, Cho KS, Lee W-H, Park S-Y, Fujihira M (2003) Fractal memory function
of biomolecular photodiode consisting of ferrocene/flavin/viologen/cytochrome c hetero-film.
J Ind Eng Chem 9:31-36
Danino T, Mondrag on-Palomino O, Tsimring L, Hasty J (2010) A synchronized quorum of genetic
clocks. Nature 463:326-330
Dragoman M, Dragoman D (2009) Nanoelectronics. Principles and devices, 2nd edn. Artech
House, Boston, MA, Chapter 7
Elbaz J, Lioubashevski O, Wang F, Remacle F, Levine RD, Willner I (2010) DNA computing
circuits using libraries of DNAzyme subunits. Nat Nanotechnol 5:417-422
Ezziane Z (2006) DNA computing: applications and challenges. Nanotechnology 17:R27-R39
Feldkamp U, Niemeyer CM (2006) Rational design of DNA nanoarchitectures. Angew Chem Int
Ed Engl 45:1856-1876
Frezza BM, Cockroft SL, Ghadiri MR (2007) Modular multi-level circuits from immobilized
DNA-based logic gates. J Am Chem Soc 129:14875-14879
Harkin J, Morgan F, McDaid L, Hall S, McGinley B, Cawley S (2009) A reconfigurable and
biologically inspired paradigm for computation using network-on-chip and spiking neural
networks. Int J Reconfigurable Comput 908740
Lederman H, Macdonald J, Stefanovic D, Stojanovic MN (2006) Deoxyribozyme-based three-
input logic gates and construction of a molecular full adder. Biochemistry 45:1194-1199
Leisner M, Bleris L, Lohmueller J, Xie Z, Benenson Y (2010) Rationally designed logic integration
of regulatory signals in mammalian cells. Nat Nanotechnol 5:666-670
Search WWH ::




Custom Search