Biomedical Engineering Reference
In-Depth Information
OpenTox web page showing uploaded data. Screenshot
of Bioclipse showing a web browser window with the
neurotoxins data hosted on the Ambit2 OpenTox
server after the upload, as shown in Figure 2.2 (see
http://apps.ideaconsult.net:8080/ambit2/
dataset/619517)
Figure 2.3
￿ ￿ ￿ ￿ ￿
when the upload has fi nished. This is currently not possible using the
scripting language.
Most of the other Bioclipse-OpenTox integration takes advantage
of the fact that Bioclipse has all GUI functionality matched by a scripted
equivalent too. The use of the BSL directly allows interaction with
the OpenTox network to be automated, combined with other
Bioclipse functionality into larger workfl ows, and makes it easier to
share procedures with others using social scientifi c
sites
like
MyExperiment [24].
For example, a BSL script equivalent for the earlier descriptor
calculation GUI would look as follows:
 
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