Biomedical Engineering Reference
In-Depth Information
[3] The Sainsbury Laboratory -
http://www.tsl.ac.uk
[4] The Gatsby Charitable Foundation -
http://www.gatsby.org.uk
[5] NetApp -
http://www.netapp.com
[6] Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman
DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs.
Nucleic Acids Research
1997;17:3389-402.
[7] GFF3 -
http://www.sequenceontology.org/gff3.shtml
[8] FASTQ -
http://en.wikipedia.org/wiki/FASTQ_format
[9] Ruby on Rails -
http://www.rubyonrails.org/
[10] REST -
http://en.wikipedia.org/wiki/Representational_State_Transfer
[11] XML -
http://en.wikipedia.org/wiki/XML
[12] JSON -
http://en.wikipedia.org/wiki/JSON
[13] Apache -
http://httpd.apache.org/
[14] Phusion Passenger -
http://www.modrails.com/
[15] Omero -
http://www.openmicroscopy.org/site/products/omero
[16] GMOD -
http://gmod.org/
[17] SAVANT -
http://genomesavant.com/
[18] IGV -
http://www.broadinstitute.org/software/igv/home
[19] JBrowse -
http://jbrowse.org/
[20] AnnoJ -
http://www.annoj.org/
[21] Ramirez-Gonzalez R, Caccamo M and MacLean D. Gee Fu: a sequence
version and web-services database tool for genomic assembly, genome
feature and NGS data.
Bioinformatics
2011; in press.
[22] Galaxy -
http://usegalaxy.org
[23] Debian -
http://www.debian.org/
[24] WinSCP -
http://winscp.net/
[25] SQLite -
http://www.sqlite.org/
[26] PostGreSQL -
http://www.postgresql.org/
[27] FedStage DRMAA -
http://sourceforge.net/projects/lsf-drmaa/
[28] nginx -
http://nginx.net/
[29] iShowU-HD -
http://www.shinywhitebox.com/ishowu-hd/
[30] BioMart -
http://www.biomart.org
[31] OBF -
http://www.open-bio.org/
[32] ENSEMBL schemas -
http://www.ensembl.org/info/data/ftp/index.html
[33] Taverna -
http://www.taverna.org.uk/
[34] SAMTools -
http://samtools.sourceforge.net/
[35] CIFS -
http://www.samba.org/cifs/
[36] SSHFS -
http://en.wikipedia.org/wiki/SSHFS
[37] FUSE -
http://fuse.sourceforge.net/
[38] NFS -
http://en.wikipedia.org/wiki/Network_File_System_[protocol]
[39] VPN -
http://en.wikipedia.org/wiki/Virtual_private_network
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