Creating an in-house ’omics data portal using EBI Atlas software - Open Source Software in Life Science Research - page 230

[8] http://www.obofoundry.org
[9] http://bioportal.bioontology.org
[10] http://www.ebi.ac.uk/efo
[11] Malone, et al. Modeling Sample Variables with an Experimental Factor
Ontology. Bioinformatics 2010;26(8):1112-8.
[12] Kapushesky, et al. Gene Expression Atlas at the European Bioinformatics
Institute. Nucleic Acids Research 2010;38(Database issue):D690-8.
[13] http://www.unidata.ucar.edu/software/netcdf/
[14] Goncalves, et al. A pipeline for RNA-seq data processing and quality
assessment. Bioinformatics 2011;27(6):867-9.
[15] Subramanian, et al. Gene set enrichment analysis: a knowledge-based
approach for interpreting genome-wide expression profi les. Proceedings of
the National Academy of Sciences USA 2005;102(43):15545-50.
￿ ￿ ￿ ￿ ￿