Biomedical Engineering Reference
In-Depth Information
frequent non-conserved motifs,' Nucleic Acids Research 2008;36(10):
3484-93.
[22] Tsirigos A and Rigoutsos I. 'Alu and b1 repeats have been selectively
retained in the upstream and intronic regions of genes of specifi c functional
classes,' PLoS Computational Biology 2009;5(12), p. e1000610.
[23] Ochoa-Espinosa A, Yu D, Tsirigos A, Struffi P and Small S. 'Anterior-
posterior positional information in the absence of a strong Bicoid gradient,'
Proceedings of the National Academy of Sciences of the United States of
America , 2009;106(10): 3823-8.
[24] Laurent L, et al. 'Dynamic changes in the human methylome during
differentiation,' Genome Research 2010;20(3):320-331.
[25] 'BED
format.'
[Online].
Available:
http://genome.ucsc.edu/FAQ/
FAQformat.html#format1 .
[26] 'GFF format.' [Online]. Available: http://www.sanger.ac.uk/resources/
software/gff/spec.html .
[27] 'SAM format.' [Online]. Available: http://samtools.sourceforge.net/SAM1.
pdf .
[28] 'WIG format.' [Online]. Available: http://genome.ucsc.edu/goldenPath/
help/wiggle.html .
[29] Ashburner M, et al. 'Gene ontology: tool for the unifi cation of biology. The
Gene Ontology Consortium,' Nature Genetics 2000;25(1):25-9.
[30] Mortazavi A, Williams BA, McCue K, Schaeffer L and Wold B. 'Mapping
and quantifying mammalian transcriptomes by RNA-Seq,' Nature Methods
2008;5(7):621-8.
[31] 'Doxygen.' [Online]. Available: http://www.doxygen.org .
[32] Rada-Iglesias A, Bajpai R, Swigut T, Brugmann SA, Flynn RA and Wysocka
J. 'A unique chromatin signature uncovers early developmental enhancers
in humans,' Nature 2011;470(7333):279-83.
[33] Ernst J, et al. 'Mapping and analysis of chromatin state dynamics in nine
human cell types,' Nature 2011;473(7345):43-9.
[34] Wu H, et al. 'Dual functions of Tet1 in transcriptional regulation in mouse
embryonic stem cells,' Nature 2011;473(7347):389-93.
[35] Stolovitzky G, Monroe D, and Califano A. 'Dialogue on reverse-engineering
assessment and methods: the DREAM of high-throughput pathway
inference,' Annals of the New York Academy of Sciences 2007;1115:1-22.
[36] Trapnell C, Pachter L, and Salzberg SL. 'TopHat: discovering splice junctions
with RNA-Seq,' Bioinformatics (Oxford, England) 2009;25(9): 1105-11.
[37] Birney E, et al., 'An overview of Ensembl,' Genome Research ,
2004;14(5):925-8.
￿ ￿ ￿ ￿ ￿
 
Search WWH ::




Custom Search