Biomedical Engineering Reference
In-Depth Information
test
Tests whether genomic regions are sorted and non-
overlapping (fi le-based)
union
Computes the interval union (line-based)
wig
Converts to UCSC wiggle format (line-based)
win
Creates new intervals by sliding windows (line-based)
x
Extracts corresponding sequences from DNA (line-based)
Example entry from the user's manual for the 'shuffl e'
operation of the genomic_regions tool
Figure 8.3
8.3.2 The genomic_overlaps tool
The genomic_overlaps tool allows the user to compute various measures
of overlaps between sets of regions (see online documentation for the
complete list of operations). This is achieved by providing a set of
Search WWH ::
Custom Search