Lipid Bilayer-Membrane Protein Coupling - Membrane Biophysics, Biological and Medical Physics, Biomedical Engineering - page 122

43. Jakalian, A., Bush, B.L., Jack, D.B., Bayly, C.I.: Fast, efficient generation of high-quality
atomic charges. AM1-BCC model: I. Method. J. Comput. Chem. 21 , 132-146 (2000).
44. Jakalian, A., Jack, D.B., Bayly, C.I.: Fast, efficient generation of high-quality atomic charges.
AM1-BCC model: II. Parameterization and Validation. J. Comput. Chem. 23 , 1623-1641
(2002).
45. Katsaras, J., Prosser, R. S., Stinson, R. H. and Davis, J. H.: Constant helical pitch of the
gramicidin channel in phospholipid bilayers. Biophys. J. 61 , 827-830 (1992).
46. Ketchem, R. R., Roux, B. and Cross, T. A.: High-resolution polypeptide structure in a lamellar
phase lipid environment from solid state NMR derived orientational constraints. Structure 5 ,
1655-1669 (1997).
47. Killian, J. A. and Nyholm, T. K.: Peptides in lipid bilayers: the power of simple models. Curr.
Opin. Struct. Biol. 16 , 473-479 (2006).
48. Killian, J. A., Salemink, I., de Planque, M. R., Lindblom, G., Koeppe, R.E. II, Greathouse,
D. V.: Induction of nonbilayer structures in diacylphosphatidylcholine model membranes by
trans-membrane alpha-helical peptides: importance of hydrophobic mismatch and proposed
role of tryptophans. Biochemistry 35 , 1037-1045 (1996).
49. Kirk, G. L. and Gruner, S. M.: Lyotropic effects of alkanes and headgroup composition on the
l α - H II lipid liquid crystal phase transition : hydrocarbon packing versus intrinsic curvature.
J. Phys. 46 , 761-769 (1985).
50. Koeppe, R.E. II, Providence, L. L., Greathouse, D. V., Heitz, F., Trudelle, Y., Purdie, N. and
Andersen, O.S.: On the helix sense of gramicidin A single channel. Proteins Struct., Funct.,
Genet. 12 , 49-62 (1992).
51. Latorre, M. and Alvarez, O.: Voltage-dependent channels in planar lipid bilayer membranes.
Physiol. Rev. 61 , 77-150 (1981).
52. Lee, M. T., Hung, W. C., Chen, F. Y. and Huang, H. W.: Many-Body Effect of Antimicrobial
Peptides: On the Correlation Between Lipid's Spontaneous Curvature and Pore Formation.
Biophys. J. 89 , 4006-4016 (2005).
53. Lee, M.C., Duan, Y.: Distinguish protein decoys by using a scoring function based on a new
Amber force field, short molecular dynamics simulations, and the generalized Born solvent
model. Proteins 55 , 620-634 (2004).
54. Lewis, B.A. and Engelman, D.M.: Lipid bilayer thickness varies linearly with acyl chain length
in fluid phosphatidylcholine vesicles. J. Mol. Biol. 166 , 211-217 (1983).
55. Lundbæk, J. A., Birn, P. H. A. J., Søgaard, R., Nielsen, C., Girshman, J., Bruno, M. J., Tape,
S. E., Egebjerg, J., Greathouse, D. V., Mattice, G. L., Koeppe, R.E. II and Andersen, O.S.:
Regulation of sodium channel function by bilayer elasticity. The importance of hydrophobic
coupling. Effects of micelle-forming amphiphiles and cholesterol. J. Gen. Physiol. 123 , 599-
621 (2004).
56. Lundbæk, J. A.: Lipid Bilayer - mediated Regulation of Ion Channel Function by Amphiphilic
drugs. J. of Gen. Physiol. 131 , 421-429 (2008).
57. Lundbæk, J.A. and Andersen, O.S.: Spring constants for channel-induced lipid bilayer defor-
mations. Estimates using gramicidin channels. Biophys. J. 76 , 889-895 (1999).
58. Ly, H. V. and Longo, M. L.: The Influence of Short-Chain Alcohols on Interfacial Tension,
Mechanical Properties, Area/Molecule, and Permeability of fluid Lipid Bilayers. Biophys. J.
87 , 1013-1033 (2004).
59. McLaughlin, S.: Electrostatic Potentials at Membrane-Solution Interfaces. Curr. Top. Membr.
Transp. 9 , 71-98 (1977).
60. Mengistu, D. H. and May, S.: Debye-Hückel theory of mixed charged-zwitterionic lipid layers.
Eur. Phys. J. E 26 , 251-260 (2008).
61. Miloshevsky, G. V. and Jordan, P. C.: Gating gramicidin channels in lipid bilayers: reaction
coordinates and the mechanism of dissociation. Biophys. J. 86 , 92-104 (2004).
62. Mobashery, N., Nielsen, C. and Andersen, O.S.: The conformational preference of gramicidin
channels is a function of lipid bilayer thickness. FEBS Lett. 412, 15-20 (1997).
63. Mtheitsen, O. G. and Bloom, M.: Mattress model of lipid-protein interactions in membranes.
Biophys. J. 46 , 141-153 (1984).