Biomedical Engineering Reference
In-Depth Information
a
U2AF
70K
U2
snRNP
U1
snRNP
hnRNP-G SRp30c
SF2/ASF
hTra2b1
hnRNP-Q
Element 1
ISS-N1
C
T
Exon 6
Exon 7
Exon 8
PTB/Fuse
hnRNPA1/2
hnRNPA1
Decrease Exon7 Inclusion
Increase Exon7 Inclusion
b
SMN2 pre mRNA
Cis-splicing
90%
10%
Exon 6
Exon 7
10%
Exon 6
Exon 8
90%
P(PY)
BP
Exon 6
Exon 7
Exon 8
7-11
BP
7
-11
M13
U6
tsRNA + 7-11
Poly A
P(PY)
Trans-splicing
SMN1 Exon7
M13
Poly A
Trans-spliced RNA
Exon 6
Exon 7
Fig. 1
Schematic of the exon 7 regulation within
SMN
pre-mRNA and
trans
-splicing strategy to replace the
SMN2
exon 7. (
a
)
SMN
pre-mRNA is regulated by
cis
elements (within intron 6, exon 7, and intron 7) and splic-
ing factors which are involved in the inclusion or exclusion of exon 7. The components of the splicing machin-
ery are shown in
yellow
. The positively acting splicing factors are shown in
green
. The negatively acting
sequences and splicing factors are shown in
red
. The C-T transition that creates a splice silencer site in
SMN2
transcript is indicated. (
b
)
Cis
-splicing of
SMN2
pre-mRNA produces two mRNAs due to an alternative splicing
event.
Trans - splicing
strategy utilizes a tsRNA that consists of (1) an antisense domain that binds to intron 6
and blocks the endogenous branch point; (2) the splicing domain with optimal branch point, polypyrimidine
tract, and 3' splice site that carry out the splicing reaction between the
SMN2
pre-mRNA and tsRNA; and (3)
the
SMN1
exon 7 which replaces
SMN2
exon 7 following a
trans
-splicing event. The generation of the
trans
-
spliced RNA is verifi ed by using a primer specifi c for the M13 sequence located downstream of the exon 7 stop
codon. Antisense oligonucleotide (7-11) expressed from the U6 promoter is located downstream of the tsRNA
sequence and binds the 3
′
splice site of exon 8
subcutaneous injections [
46
]. Gene therapy applications utilizing
gene correction system by therapeutic RNAs in SMA have been
reviewed in detail [
50
-
54
]; therefore, we will only discuss the gene
replacement therapy using viral vectors.
First gene replacement strategy in SMA utilized a lentiviral vector
expressing full-length human SMN cDNA that was retrogradely
transported into motor neurons following multiple injections
into a large number of muscles in SMN
1.1.5 SMA Gene
Replacement Therapy
7 mice [
55
]. The out-
come was more viable motor neurons and a modest extension in
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