Metabolic Networks - Biological Networks - page 189

References
Albert, R. and Othmer, H. G. (2003). The topology of the regulatory interactions predict the
expression pattern of the segment polarity genes in Drosophila melanogaster , J. Theor. Biol. ,
223, pp. 1-18.
Albers, E., Laizé, V., Blomberg, A., Hohmann, S. and Gustafsson, L. (2003). Ser3p (Yer081wp)
and Ser33p (Yil074cp) are phosphoglycerate dehydrogenases in Saccharomyces cerevisiae , J.
Biol. Chem. , 278, pp. 10264-10272.
Alfonzo, J. D., Croter, T. R., Guetsova, M. L., Daignan-Fornier, B. and Taylor, M. W. (1999).
APT1 but Not APT2, codes for a functional adenine phosphoribosyltransferase in
Saccharomyces cerevisiae , J. Bacteriol. , 181, pp. 347-352.
Artzy-Randrup, Y., Fleishman, S. J., Ben-Tal, N. and Stone, L. (2004). Comment on “Network
Motifs: Simple Building Blocks of Complex Networks” and “Superfamilies of Evolved and
Designed Networks”, Science , 305, 1107c.
Avendano, A., DeLuna, A., Olivera, H., Valenzuela, L. and Gonzales, A. (1997). GDH3 encodes a
glutamate dehydrogenase isozyme, a previously unrecognized route for glutamate biosynthesis
in Saccharomyces cerevisiae , J. Bacteriol. , 179, pp. 5594-5597.
Bhalla, U. S. and Iyengar, R. (1999). Emergent properties of networks of biological signalling
pathways, Nature , 283, pp. 381-387.
Blank, L. M., Kuepfer, L. and Sauer, U. (2005). Large-scale 13 C-flux analysis reveals mechanistic
principles of metabolic network robustness to null mutations in yeast, Genome Biology , 6,
pp. 1-15.
Boles, E., Liebetrau, W., Hofmann, M. and Zimmermann, F. K. (1994). A family of
hexosephosphate mutases in Saccharomyces cerevisiae , Eur. J. Biochem. , 220, pp. 83-96.
Bork, P., Jensen, L. J., Von Mering, C., Ramani, A. K., Lee, I. and Marcotte, E. M. (2004). Protein
interaction networks from yeast to human, Curr. Opin. Struct. Biol ., 14, pp. 292-299.
Branden, C. and Tooze, J. (1991). Introduction to protein structure , Garland Publishing Company,
New York, NY.
Chua, G., Robinson, M. D., Morris, Q. and Hughes, T. R. (2004). Transcriptional networks:
reverse-engineering gene regulation on global scale, Curr. Opin. Microbiol. , 7, pp. 638-646.
Crampin, E. J., Schnell, S. and McSharry, P. E. (2004). Mathematical and computational
techniques to deduce complex biochemical reaction mechanism, Prog. Biophys. Mol. Biol ., 86,
pp. 77-112.
Dang, V.-D., Valens, M., Bolotin-Fukuhara, M. and Daignan-Fornier, B. (1996). Cloning of the
ASN1 and ASN2 genes encoding asparagines synthetases in Saccharomyces cerevisiae :
differential regulation by the CCAAT-box-binding factor, Mol. Microbiol. , 22, pp. 681-692.
Dandekar, T., Schuster, S., Snel, B., Huynen, M. and Bork, P, (1999). Pathway alignment:
application to the comparative analysis of glycolytic enzymes, Biochem. J. , 343, pp. 115-124.
De Jong, H. (2002). Modeling and simulation of genetic regulatory systems: A literature review,
J. Comput. Biol., 9, pp. 67-103.
De Montigny, J., Kern, L., Hubert, J.-C. and Lacroute, F. (1990). Cloning and sequencing of
Ura10 , a second gene encoding orotate phosphoribosyl transferase in Saccharomyces
cerevisiae , Curr. Genet. , 17, pp. 105-111.
Delgado, M. L., O'Connor, J. E., Azorìn, I., Renau-Piqueras, J., Gil, M. L. and Gozalbo, D. (2001).
The glyceraldehyde-3-phosphate dehydrogenase polypeptides encoded by the Saccharomyces
cerevisiae TDH1, TDH2 and TDH3 genes are also cell wall proteins, Microbiology , 147,
pp. 411-417.