Biology Reference
In-Depth Information
Heinemann, M. and Zenobi, R. (2011). Single cell metabolomics.
Curr. Opin. Biotechnol.
22,
26-31.
Hiller, J., Franco-Lara, E., Papaioannou, V., and Weuster-Botz, D. (2007). Fast sampling and
quenching procedures for microbial metabolic profiling.
Biotechnol. Lett.
29, 1161-1167.
Kimball, E. and Rabinowitz, J. D. (2006). Identifying decomposition products in extracts of
cellular metabolites.
Anal. Biochem.
358, 273-280.
Kresnowati, M. T., van Winden, W. A., Almering, M. J., ten Pierick, A., Ras, C.,
Knijnenburg, T. A., Daran-Lapujade, P., Pronk, J. T., Heijnen, J. J., and Daran, J. M.
(2006). When transcriptome meets metabolome: fast cellular responses of yeast to sudden
relief of glucose limitation.
Mol. Syst. Biol.
2, 49.
K¨mmel, A., Panke, S., and Heinemann, M. (2006). Putative regulatory sites unraveled by
network-embedded thermodynamic analysis of metabolome data.
Mol. Syst. Biol.
2, 34.
K¨mmel, A., Ewald, J. C., Fendt, S. M., Jol, S. J., Picotti, P., Aebersold, R., Sauer, U.,
Zamboni, N., and Heinemann, M. (2010). Differential glucose repression in common yeast
strains in response to HXK2 deletion.
FEMS Yeast Res.
10, 322-332.
Link, H., Anselment, B., and Weuster-Botz, D. (2008). Leakage of adenylates during cold
methanol/glycerol quenching of Escherichia coli.
Metabolomics
4, 240-247.
Link, H., Anselment, B., and Weuster-Botz, D. (2009). Rapid media transition: an experimen-
tal approach for steady state analysis of metabolic pathways.
Biotechnol. Prog.
26, 1-10.
Madalinski, G., Godat, E., Alves, S., Lesage, D., Genin, E., Levi, P., Labarre, J., Tabet, J. C.,
Ezan, E., and Junot, C. (2008). Direct introduction of biological samples into a LTQ-
Orbitrap hybrid mass spectrometer as a tool for fast metabolome analysis.
Anal. Chem.
80, 3291-3303.
Maharjan, R. P. and Ferenci, T. (2003). Global metabolite analysis: the influence of extrac-
tion methodology on metabolome profiles of Escherichia coli.
Anal. Biochem.
313,
145-154.
Mashego, M. R., Wu, L., Van Dam, J. C., Ras, C., Vinke, J. L., Van Winden, W. A.,
Van Gulik, W. M., and Heijnen, J. J. (2004). MIRACLE: mass isotopomer ratio analysis
of U-13C-labeled extracts. A new method for accurate quantification of changes in
concentrations of intracellular metabolites.
Biotechnol. Bioeng.
85, 620-628.
Orth, J. D., Conrad, T. M., Na, J., Lerman, J. A., Nam, H., Feist, A. M., and Palsson, B.
. (2011).
A comprehensive genome-scale reconstruction of Escherichia coli metabolism—2011.
Mol. Syst. Biol.
7, 535.
Rabinowitz, J. D. (2007). Cellular metabolomics of
Escherchia coli
.
Expert Rev. Proteomics
4, 187-198.
Rabinowitz, J. D. and Kimball, E. (2007). Acidic acetonitrile for cellular metabolome extrac-
tion from Escherichia coli.
Anal. Chem.
79, 6167-6173.
Schaefer, U., Boos, W., Takors, R., and Weuster-Botz, D. (1999). Automated sampling device
for monitoring intracellular metabolite dynamics.
Anal. Biochem.
270, 88-96.
Schaub, J., Schiesling, C., Reuss, M., and Dauner, M. (2006). Integrated sampling procedure
for metabolome analysis.
Biotechnol. Prog.
22, 1434-1442.
Taymaz-Nikerel, H., de Mey, M., Ras, C., ten Pierick, A., Seifar, R. M., van Dam, J. C.,
Heijnen, J. J., and van Gulik, W. M. (2009). Development and application of a differential
method for reliable metabolome analysis in Escherichia coli.
Anal. Biochem.
386, 9-19.
van der Werf, M. J., Overkamp, K. M., Muilwijk, B., Coulier, L., and Hankemeier, T. (2007a).
Microbial metabolomics:
toward a platform with full metabolome coverage.
Anal.
Biochem.
370, 17-25.