Biology Reference
In-Depth Information
Becher, D., B ¨ ttner, K., Moche, M., Hessling, B., and Hecker, M. (2011). From the genome
sequence to the protein inventory of Bacillus subtilis . Proteomics 11(15), 2971-2980.
Bensimon, A., Heck, A. J., and Aebersold, R. (2012). Mass spectrometry-based proteomics
and network biology. Annu. Rev. Biochem. 81, 379-405.
Bernhardt, J., B¨ ttner, K., Scharf, C., and Hecker, M. (1999). Dual channel imaging of two-
dimensional electropherograms in Bacillus subtilis . Electrophoresis 20(11), 2225-2240.
Berth, M., Moser, F. M., Kolbe, M., and Bernhardt, J. (2007). The state of the art in the analysis of
two-dimensional gel electrophoresis images. Appl. Microbiol. Biotechnol. 76(6), 1223-1243.
Beynon, R. J., Doherty, M. K., Pratt, J. M., and Gaskell, S. J. (2005). Multiplexed absolute
quantification in proteomics using artificial QCAT proteins of concatenated signature
peptides. Nat. Methods 2(8), 587-589.
Brownridge, P. and Beynon, R. J. (2011). The importance of the digest: proteolysis and abso-
lute quantification in proteomics. Methods 54(4), 351-360.
Brownridge, P., Holman, S. W., Gaskell, S. J., Grant, C. M., Harman, V. M., Hubbard, S. J.,
Lanthaler, K., Lawless, C., O'Cualain, R., Sims, P., Watkins, R., and Beynon, R. J. (2011).
Global absolute quantification of a proteome: challenges in the deployment of a QconCAT
strategy. Proteomics 11(15), 2957-2970.
Brun, V., Dupuis, A., Adrait, A., Marcellin, M., Thomas, D., Court, M., Vandenesch, F., and
Garin, J. (2007). Isotope-labeled protein standards: toward absolute quantitative proteo-
mics. Mol. Cell. Proteomics 6(12), 2139-2149.
Budde, I., Steil, L., Scharf, C., V ¨ lker, U., and Bremer, E. (2006). Adaptation of Bacillus sub-
tilis to growth at low temperature: a combined transcriptomic and proteomic appraisal.
Microbiology 152(Pt. 3), 831-853.
Carrette, O., Burkhard, P. R., Sanchez, J. C., and Hochstrasser, D. F. (2006). State-of-the-art
two-dimensional gel electrophoresis: a key tool of proteomics research. Nat. Protoc. 1(2),
812-823.
Chuang, H. Y., Hofree, M., and Ideker, T. (2010). A decade of systems biology. Annu. Rev.
Cell Dev. Biol. 26, 721-744.
Cox, J. and Mann, M. (2007). Is proteomics the new genomics? Cell 130(3), 395-398.
Cox, J. andMann, M. (2011). Quantitative, high-resolution proteomics for data-driven systems
biology. Annu. Rev. Biochem. 80, 273-299.
de Godoy, L. M., Olsen, J. V., Cox, J., Nielsen, M. L., Hubner, N. C., Fr¨hlich, F.,
Walther, T. C., and Mann, M. (2008). Comprehensive mass-spectrometry-based proteome
quantification of haploid versus diploid yeast. Nature 455(7217), 1251-1254.
Desiere, F., Deutsch, E. W., Nesvizhskii, A. I., Mallick, P., King, N. L., Eng, J. K., Aderem, A.,
Boyle, R., Brunner, E., Donohoe, S., Fausto, N., Hafen, E., Hood, L., Katze, M. G.,
Kennedy, K. A., Kregenow, F., Lee, H., Lin, B., Martin, D., Ranish, J. A.,
Rawlings, D. J., Samelson, L. E., Shiio, Y., Watts, J. D., Wollscheid, B.,
Wright, M. E., Yan, W., Yang, L., Yi, E. C., Zhang, H., and Aebersold, R. (2005). Inte-
gration with the human genome of peptide sequences obtained by high-throughput mass
spectrometry. Genome Biol. 6(1), R9.
Domon, B. and Aebersold, R. (2010). Options and considerations when selecting a quantitative
proteomics strategy. Nat. Biotechnol. 28(7), 710-721.
Dreisbach, A., Otto, A., Becher, D., Hammer, E., Teumer, A., Gouw, J. W., Hecker, M., and
V¨ lker, U. (2008). Monitoring of changes in the membrane proteome during stationary
phase adaptation of Bacillus subtilis using in vivo labeling techniques. Proteomics 8
(10), 2062-2076.
Search WWH ::




Custom Search