Biomolecular Recognition: The Current Challenge - Dynamic Force Spectroscopy and Biomolecular Recognition - page 40

3. Aleksandrov, A., and T. Simonson. 2010. Molecular dynamics simulations show that
conformational selection governs the binding preferences of Imatinib for several tyrosine
kinases. J. Biol. Chem. 285:13807-13815.
4. Aleksic M., O. Dushek, H. Zhang, E. Shenderov, J-L. Chen, V. Cerundolo, D. Coombs,
and P. A. van der Merwe. 2010. Dependence of T cell antigen recognition on T cell
receptor-peptide MHC confinement time. Immunity 32:163-174.
5. Alon, R., D. A. Hammer, and T. A. Springer. 1995. Lifetime of P-selectin-carbohydrate
bond and its response to tensile force in hydrodynamic flow. Nature 374:539-542. (Cor-
rection: Nature 377:86, 1995).
6. Ansari, A., J. Berendzen, S. F. Bowne, H. Frauenfelder, I. E. T. Iben, T. B. Sauke, E.
Shyamsunder, and R. T. Young. 1985. Protein states and proteinquakes. Proc. Natl.
Acad. Sci. USA 82:5000-5004.
7. Argiriadi, M. A., T. Xiang, C. Wu, T. Ghayur, and D. W. Borhani. 2009. Unusual water-
mediated antigenic recognition of the proinflammatory cytokine Interleukin-18. J. Biol.
Chem. 284:24478-24489.
8. Astrof, N. S., A. Salas, M. Shimaoka, J. F. Chen, and T. A. Springer. 2006. Importance
of force linkage in mechanochemistry of adhesion receptors. Biochemistry 45:15020-
15028.
9. Badis, G., M. F. Berger, A. Anthony, A. A. Philippakis, S. Talukder, A. R. Gehrke, S.
A. Jaeger, E. T. Chan, G. Metzler, A. Vedenko, X. Chen, H. Kuznetsov, C-F. Wang, D.
Coburn, D. E. Newburger, Q. Morris, T. R. Hughes, and M. L. Bulyk. 2009. Diversity
and complexity in DNA recognition by transcription factors. Science 324:1720-1723.
10. Baumgartner, W., P. Hinterdorfer, W. Ness, A. Raab A, D. Vestweber, H. Schindler, and
D. Drenckhahn. 2000. Cadherin interaction probed by atomic force microscopy. Proc.
Natl. Acad. Sci. USA 97:4005-4010.
11. Bayas, M. V., K. Schulten, and D. Leckband. 2003. Forced detachment of the CD2-
CD58 complex. Biophys. J . 84:2223-2233.
12. Bell, G. I. 1978. Models for the specific adhesion of cells to cells. Science 200:618-627.
13. Bell, G. I., M. Dembo, and P. Bongrand. 1984. Cell adhesion: competition between
nonspecific repulsion and specific bonding. Biophys. J. 45:1051-1064.
14. Bentley, D., and A. Toroian-Raymond. 1986. Disoriented pathfinding by pioneer neu-
rone growth cones deprived of filopodia by cytochalasin treatment. Nature 323:712-715.
15. Best, R. B., and G. Hummer. 2005. Reaction coordinates and rates from transition paths.
Proc. Natl. Acad. Sci. USA 102:6732-6737.
16. Blow, N. 2009. Untangling the protein web. Nature . 460:415-418.
17. Bongrand, P., and G. I. Bell. 1984. Cell-cell adhesion: Parameters and possible mecha-
nism. In Cell Surface Dynamics. Concepts and Models . eds A. S. Perelson, C. DeLisi,
and F. W. Wiegel. 459-493. New York: Marcel Dekker.
18. Bongrand, P., P. M. Claesson, and A. S. G. Curtis (eds). 1994. Studying cell adhesion .
Berlin: Springer-Verlag.
19. Bongrand, P., and B. Malissen. 1998. Quantitative aspects of T-cell recognition: From
within the antigen-presenting cell to within the T cell. Bioessays 20:412-422.
20. Bongrand, P. 1999. Ligand-receptor interactions. Rep. Prog. Phys. 62:921-968.
21. Boniface, J. J., Z. Reich, D. S. Lyon, and M. M. Davies. 1999. Thermodynamics of T
cell receptor binding to peptide-MHC: Evidence for a general mechanism of molecular
scanning. Proc. Natl. Acad. Sci. USA 96:1446-11451.
22. Brock, K., K. Talley, K. Coley, P. Kundrotas, and E. Alexov. 2007. Optimization of
electrostatic interactions in protein-protein complexes. Biophys. J. 93:3340-3352.