Biology Reference
In-Depth Information
Hawkins, R. D., Hon, G. C., & Ren, B. (2010). Next-generation genomics: An integrative
approach.
Nature Reviews. Genetics
,
11
, 476-486.
Hellsten, U. U., Harland, R. M., Gilchrist, M. J., Hendrix, D., Jurka, J., Kapitonov, V., et al.
(2010). The genome of the Western clawed frog Xenopus tropicalis.
Science
,
328
,
633-636.
Kawahara, A., Baker, B. S., & Tata, J. R. (1991). Developmental and regional expression of
thyroid hormone receptor genes during Xenopus metamorphosis.
Development
,
112
,
933-943.
Kim, S.-I., Bresnick, E. H., & Bultman, S. J. (2009). BRG1 directly regulates nucleosome
structure and chromatin looping of the alpha globin locus to activate transcription.
Nucleic Acids Research
,
37
, 6019-6027.
Klein, S., Strausberg, R., Wagner, L., Pontius, J., Clifton, S., & Richardson, P. (2002).
Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative.
Developmental Dynamics
,
225
, 384-391.
Łabaj, P. P., Leparc, G. G., Linggi, B. E., Markillie, L. M., Wiley, H. S., & Kreil, D. P.
(2011). Characterization and improvement of RNA-Seq precision in quantitative tran-
script expression profiling.
Bioinformatics
,
27
, i383-i391.
Laudet, V. (2011). The origins and evolution of vertebrate metamorphosis.
Current Biology
,
21
, R726-R737.
Metzker, M. L. (2010). Sequencing technologies—The next generation.
Nature Reviews.
Genetics
,
11
, 31-46.
Nagaraj, S. H., Gasser, R. B., & Ranganathan, S. (2007). A hitchhiker's guide to expressed
sequence tag (EST) analysis.
Briefings in Bioinformatics
,
8
, 6-21.
Nielsen, R., Pedersen, T. A., Hagenbeek, D., Moulos, P., Siersbaek, R., Megens, E., et al.
(2008). Genome-wide profiling of PPARgamma: RXR and RNA polymerase II occu-
pancy reveals temporal activation of distinct metabolic pathways and changes in RXR
dimer composition during adipogenesis.
Genes & Development
,
22
, 2953-2967.
Pruitt, K. D., Tatusova, T., Klimke, W., & Maglott, D. R. (2009). NCBI reference
sequences: Current
status, policy and new initiatives.
Nucleic Acids Research
,
37
,
D32-D36.
Ranjan, M., Wong, J., & Shi, Y. B. (1994). Transcriptional repression of Xenopus TR beta
gene is mediated by a thyroid hormone response element located near the start site.
Jour-
nal of Biological Chemistry
,
269
, 24699-24705.
Ruan, X., & Ruan, Y. (2011). Genome wide full-length transcript analysis using 5” and 3”
paired-end-tag next generation sequencing (RNA-PET).
Methods in Molecular Biology
,
809
, 535-562.
Sachs, L., Damjanovski, S., Jones, P., Li, Q., Amano, T., Ueda, S., et al. (2000). Dual func-
tions of thyroid hormone receptors during Xenopus development.
Comparative Biochem-
istry and Physiology. Part B, Biochemistry & Molecular Biology
,
126
, 199-211.
Sachs, L. M., & Shi, Y. B. (2000). Targeted chromatin binding and histone acetylation in vivo
by thyroid hormone receptor during amphibian development.
Proceedings of the National
Academy of Sciences of the United States of America
,
97
, 13138-13143.
Salamov, A. A., & Solovyev, V. V. (2000). Ab initio gene finding in Drosophila genomic
DNA.
Genome Research
,
10
, 516-522.
Sandelin, A., &Wasserman, W. W. (2005). Prediction of nuclear hormone receptor response
elements.
Molecular Endocrinology
,
19
, 595-606.
Santos, G. M. G., Fairall, L., & Schwabe, J. W. R. J. (2011). Negative regulation by nuclear
receptors: A plethora of mechanisms.
Trends in Endocrinology and Metabolism
,
22
, 87-93.
Sboner, A., Mu, X. J., Greenbaum, D., Auerbach, R. K., & Gerstein, M. B. (2011). The real
cost of sequencing: Higher than you think!.
Genome Biology
,
12
, 125.
