Epigenetic Regulation of the Molecular Clockwork - Progress in Molecular Biology and Translational Science - page 49

73. Karlsson BH, Knutsson AK, Lindahl BO, Alfredsson LS. Metabolic disturbances in male
workers with rotating three-shift work. Results of the WOLF study. Int Arch Occup Envi-
ron Health . 2003;76(6):424-430.
74. Fonken LK, Finy MS, Walton JC, et al. Influence of light at night on murine anxiety-
and depressive-like responses. Behav Brain Res . 2009;205(2):349-354.
75. Eckel-Mahan KL, Patel VR, Mohney RP, Vignola KS, Baldi P, Sassone-Corsi P. Coor-
dination of the transcriptome and metabolome by the circadian clock. Proc Natl Acad Sci
USA . 2012;109(14):5541-5546.
76. Xie X, Rigor P, Baldi P. MotifMap: a human genome-wide map of candidate regulatory
motif sites. Bioinformatics . 2009;25(2):167-174.
77. Daily K, Patel VR, Rigor P, Xie X, Baldi P. MotifMap: integrative genome-wide maps
of regulatory motif sites for model species. BMC Bioinformatics . 2011;12(1):495.
78. Kanehisa M, Goto S, Sato Y, Furumichi M, Tanabe M. KEGG for integration and inter-
pretation of large-scale molecular data sets. Nucleic Acids Res . 2011;40(Database issue):
D109-D114.
79. Kanehisa M, Goto S, Hattori M, et al. From genomics to chemical genomics: new devel-
opments in KEGG. Nucleic Acids Res . 2006;34(Database issue):D354-D357.
80. Kanehisa M, Goto S. KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids
Res . 2000;28(1):27-30.
81. Dallmann R, Viola AU, Tarokh L, Cajochen C, Brown SA. The human circadian
metabolome. Proc Natl Acad Sci USA . 2012;109(7):2625-2629.
82. Minami Y, Kasukawa T, Kakazu Y, et al. Measurement of internal body time by blood
metabolomics. Proc Natl Acad Sci USA . 2009;106(24):9890-9895.
83. Jeyaraj D, Scheer FA, Ripperger JA, et al. Klf15 orchestrates circadian nitrogen homeo-
stasis. Cell Metab . 2012;15(3):311-323.
84. Fogle KJ, Parson KG, Dahm NA, Holmes TC. CRYPTOCHROME is a blue-light
sensor that regulates neuronal firing rate. Science . 2011;331(6023):1409-1413.
85. Dioum EM, Rutter J, Tuckerman JR, Gonzalez G, Gilles-Gonzalez MA,
McKnight SL. NPAS2: a gas-responsive transcription factor. Science . 2002;298

(5602):2385-2387.
86. Raghuram S, Stayrook KR, Huang P, et al. Identification of heme as the ligand for the
orphan nuclear receptors REV-ERBalpha and REV-ERBbeta. Nat Struct Mol Biol .
2007;14(12):1207-1213.
87. Yin L, Wu N, Curtin JC, et al. Rev-erbalpha, a heme sensor that coordinates metabolic
and circadian pathways. Science . 2007;318(5857):1786-1789.
88. Wu N, Yin L, Hanniman EA, Joshi S, Lazar MA. Negative feedback
maintenance of heme homeostasis by its receptor, Rev-erbalpha. Genes Dev . 2009;23
(18):2201-2209.
89. Yin L, Wu N, Lazar MA. Nuclear receptor Rev-erbalpha: a heme receptor that coor-
dinates circadian rhythm and metabolism. Nucl Recept Signal . 2010;8:e001.
90. Cipriani G, Rapizzi E, Vannacci A, Rizzuto R, Moroni F, Chiarugi A. Nuclear poly(-
ADP-ribose) polymerase-1 rapidly triggers mitochondrial dysfunction.

J Biol Chem .

2005;280(17):17227-17234.
91. Ha HC, Snyder SH. Poly(ADP-ribose) polymerase is a mediator of necrotic cell death by
ATP depletion. Proc Natl Acad Sci USA . 1999;96(24):13978-13982.
92. Kauppinen TM, Swanson RA. The role of poly(ADP-ribose) polymerase-1 in CNS dis-
ease. Neuroscience . 2007;145(4):1267-1272.
93. Krishnakumar R, Kraus WL. PARP-1 regulates chromatin structure and transcription
through a KDM5B-dependent pathway. Mol Cell . 2010;39(5):736-749.
94. Guse AH, da Silva CP, Berg I, et al. Regulation of calcium signalling in T lymphocytes
by the second messenger cyclic ADP-ribose. Nature . 1999;398(6722):70-73.
95. Sladek FM. What are nuclear receptor ligands? Mol Cell Endocrinol . 2011;334(1-2):3-13.