Microfluidic Tools for DNA Analysis - DNA Nanotechnology: From Structure to Function - page 148

80. Zhu QY, Gao YB, Yu BW, Ren H, Qiu L, Han SH, Jin W, Jin QH, Mu Y (2012) Self-priming
compartmentalization digital LAMP for point of care. Lab Chip. doi: 10.1039/C2LC40774D
81. Du W, Li L, Nichols KP, Ismagilov RF (2009) SlipChip. Lab Chip 9(16):2286-2292.
doi: 10.1039/b908978k
82. Hosokawa K, Sato K, Ichikawa N, Maeda M (2004) Power-free poly(dimethylsiloxane)
microfluidic devices for gold nanoparticle-based DNA analysis. Lab Chip 4(3):181-185.
doi: 10.1039/b403930k
83. Shen F, Davydova EK, Du WB, Kreutz JE, Piepenburg O, Ismagilov RF (2011) Digital
isothermal quantification of nucleic acids via simultaneous chemical initiation of recom-
binase polymerase amplification reactions on SlipChip. Anal Chem 83(9):3533-3540.

doi: 10.1021/ac200247e
84. Hindson BJ, Ness KD, Masquelier DA, Belgrader P, Heredia NJ, Makarewicz AJ, Bright
IJ, Lucero MY, Hiddessen AL, Legler TC, Kitano TK, Hodel MR, Petersen JF, Wyatt
PW, Steenblock ER, Shah PH, Bousse LJ, Troup CB, Mellen JC, Wittmann DK, Erndt
NG, Cauley TH, Koehler RT, So AP, Dube S, Rose KA, Montesclaros L, Wang SL,
Stumbo DP, Hodges SP, Romine S, Milanovich FP, White HE, Regan JF, Karlin-Neumann
GA, Hindson CM, Saxonov S, Colston BW (2011) High-throughput droplet digital PCR
system for absolute quantitation of DNA copy number. Anal Chem 83(22):8604-8610.
doi: 10.1021/Ac202028g
85. Feuk L, Carson AR, Scherer SW (2006) Structural variation in the human genome. Nat Rev
Genet 7(2):85-97. doi: 10.1038/nrg1767
86. Lupski JR (2007) Structural variation in the human genome. N Engl J Med 356(11):1169-
1171. doi : 10.1056/NEJMcibr067658
87. Stankiewicz P, Lupski JR (2010) Structural variation in the human genome and its role in
disease. Annu Rev Med 61:437-455. doi: 10.1146/annurev-med-100708-204735
88. Scherer SW, Lee C, Birney E, Altshuler DM, Eichler EE, Carter NP, Hurles ME, Feuk L
(2007) Challenges and standards in integrating surveys of structural variation. Nat Genet
39:S7-S15. doi: 10.1038/ng2093
89. Baker M (2012) Structural variation: the genome's hidden architecture. Nat Methods

9(2):133-137. doi: 10.1038/nmeth.1858
90. Cao H, Tegenfeldt JO, Austin RH, Chou SY (2002) Gradient nanostructures for interfacing
microfluidics and nanofluidics. Appl Phys Lett 81(16):3058-3060. doi: 10.1063/1.1515115
91. Das SK, Austin MD, Akana MC, Deshpande P, Cao H, Xiao M (2010) Single molecule linear
analysis of DNA in nano-channel labeled with sequence specific fluorescent probes. Nucleic
Acids Res 38(18):e177. doi: 10.1093/nar/gkq673
92. Baday M, Cravens A, Hastie A, Kim H, Kudeki DE, Kwok P-Y, Xiao M, Selvin PR (2012)
Multicolor super-resolution DNA imaging for genetic analysis. Nano Lett 12:3861-3866.
doi: 10.1021/nl302069q
93. Larson JW, Yantz GR, Zhong Q, Charnas R, D'Antoni CM, Gallo MV, Gillis KA, Neely
LA, Phillips KM, Wong GG, Gullans SR, Gilmanshin R (2006) Single DNA molecule
stretching in sudden mixed shear and elongational microflows. Lab Chip 6(9):1187-1199.
doi: 10.1039/b602845d
94. Chan EY, Goncalves NM, Haeusler RA, Hatch AJ, Larson JW, Maletta AM, Yantz GR,
Carstea ED, Fuchs M, Wong GG, Gullans SR, Gilmanshin R (2004) DNA mapping
using microfluidic stretching and single-molecule detection of fluorescent site-specific tags.
Genome Res 14(6):1137-1146. doi: 10.1101/gr.1635204
95. Dimalanta ET, Lim A, Runnheim R, Lamers C, Churas C, Forrest DK, de Pablo JJ, Graham
MD, Coppersmith SN, Goldstein S, Schwartz DC (2004) A microfluidic system for large
DNA molecule arrays. Anal Chem 76(18):5293-5301. doi: 10.1021/ac0496401
96. Teague B, Waterman MS, Goldstein S, Potamousis K, Zhou SG, Reslewic S, Sarkar D,
Valouev A, Churas C, Kidd JM, Kohn S, Runnheim R, Lamers C, Forrest D, Newton MA,
Eichler EE, Kent-First M, Surti U, Livny M, Schwartz DC (2010) High-resolution human
genome structure by single-molecule analysis. Proc Natl Acad Sci U S A 107(24):10848-
10853. doi: 10.1073/pnas.0914638107