Microfluidic Tools for DNA Analysis - DNA Nanotechnology: From Structure to Function - page 146

49. Wang CH, Lien KY, Wu JJ, Lee GB (2011) A magnetic bead-based assay for the
rapid detection of methicillin-resistant Staphylococcus aureus by using a microfluidic
system with integrated loop-mediated isothermal amplification. Lab Chip 11(8):1521-1531.
doi: 10.1039/c0lc00430h
50. Liu C, Geva E, Mauk M, Qiu X, Abrams WR, Malamud D, Curtis K, Owen SM,
Bau HH (2011) An isothermal amplification reactor with an integrated isolation mem-
brane for point-of-care detection of infectious diseases. Analyst 136(10):2069-2076.

doi: 10.1039/c1an00007a
51. Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman
MS, Chen Y-J, Chen Z, Dewell SB, Du L, Fierro JM, Gomes XV, Godwin BC, He W,
Helgesen S, Ho CH, Irzyk GP, Jando SC, Alenquer MLI, Jarvie TP, Jirage KB, Kim J-B,
Knight JR, Lanza JR, Leamon JH, Lefkowitz SM, Lei M, Li J, Lohman KL, Lu H, Makhijani
VB, McDade KE, McKenna MP, Myers EW, Nickerson E, Nobile JR, Plant R, Puc BP,
Ronan MT, Roth GT, Sarkis GJ, Simons JF, Simpson JW, Srinivasan M, Tartaro KR, Tomasz
A, Vogt KA, Volkmer GA, Wang SH, Wang Y, Weiner MP, Yu P, Begley RF, Rothberg
JM (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature
437(7057):376-380. doi: 10.1038/nature03959
52. Sims PA, Greenleaf WJ, Duan HF, Xie S (2011) Fluorogenic DNA sequencing in PDMS
microreactors. Nat Methods 8(7):U575-U584. doi: 10.1038/nmeth.1629
53. Eid J, Fehr A, Gray J, Luong K, Lyle J, Otto G, Peluso P, Rank D, Baybayan P, Bettman B,
Bibillo A, Bjornson K, Chaudhuri B, Christians F, Cicero R, Clark S, Dalal R, Dewinter A,
Dixon J, Foquet M, Gaertner A, Hardenbol P, Heiner C, Hester K, Holden D, Kearns G, Kong
XX, Kuse R, Lacroix Y, Lin S, Lundquist P, Ma CC, Marks P, Maxham M, Murphy D, Park I,
Pham T, Phillips M, Roy J, Sebra R, Shen G, Sorenson J, Tomaney A, Travers K, Trulson M,
Vieceli J, Wegener J, Wu D, Yang A, Zaccarin D, Zhao P, Zhong F, Korlach J, Turner S (2009)
Real-time DNA sequencing from single polymerase molecules. Science 323(5910):133-138.
doi: 10.1126/science.1162986
54. Zhu P, Craighead HG (2012) Zero-mode waveguides for single-molecule analysis. Ann Rev
Biophys 41:269-293. doi: 10.1146/annurev-biophys-050511-102338
55. Baner J, Nilsson M, Mendel-Hartvig M, Landegren U (1998) Signal amplification
of padlock probes by rolling circle replication. Nucleic Acids Res 26(22):5073-5078.
doi: 10.1093/nar/26.22.5073
56. Notomi T, Okayama H, Masubuchi H, Yonekawa T, Watanabe K, Amino N, Hase T
(2000) Loop-mediated isothermal amplification of DNA. Nucleic Acids Res 28(12):e63.
doi: 10.1093/nar/28.12.e63
57. Mitani Y, Lezhava A, Kawai Y, Kikuchi T, Oguchi-Katayama A, Kogo Y, Itoh M, Miyagi T,
Takakura H, Hoshi K, Kato C, Arakawa T, Shibata K, Fukui K, Masui R, Kuramitsu S,
Kiyotani K, Chalk A, Tsunekawa K, Murakami M, Kamataki T, Oka T, Shimada H,
Cizdziel PE, Hayashizaki Y (2007) Rapid SNP diagnostics using asymmetric isothermal
amplification and a new mismatch-suppression technology. Nat Methods 4(3):257-262.
doi: 10.1038/nmeth1007
58. Vincent M, Xu Y, Kong HM (2004) Helicase-dependent isothermal DNA amplification.
EMBO Rep 5(8):795-800. doi: 10.1038/sj.embor.7400200
59. Piepenburg O, Williams CH, Stemple DL, Armes NA (2006) DNA detection using recombi-
nation proteins. PLoS Biol 4(7):1115-1121. doi: 10.1371/journal.pbio.0040204
60. Ramalingam N, San TC, Kai TJ, Mak MYM, Gong H-Q (2009) Microfluidic devices harbor-
ing unsealed reactors for real-time isothermal helicase-dependent amplification. Microfluid
Nanofluid 7(3):325-336. doi: 10.1007/s10404-008-0378-1
61. Kawai Y, Kimura Y, Lezhava A, Kanamori H, Usui K, Hanami T, Soma T, Morlighem J-E,
Saga S, Ishizu Y, Aoki S, Endo R, Oguchi-Katayama A, Kogo Y, Mitani Y, Ishidao T,
Kawakami C, Kurata H, Furuya Y, Saito T, Okazaki N, Chikahira M, Hayashi E, S-i T,
Toguchi T, Saito Y, Ban T, Izumi S, Uryu H, Kudo K, Sakai-Tagawa Y, Kawaoka Y,