Assembly and Export of Extracellular Polymeric Substances (EPS) in Cyanobacteria: A Phylogenomic Approach - Advances in Botanical Research - page 255

Nostoc sp. PCC 7120 alr4485

all4219
alr2373
alr1500
alr1491
alr0076
all7196
all0917

No hits No hits alr3464

alr2432

all5222
all4432
alr3059
alr2856
alr2833
all0059

all4388
alr2294
all0495

Cylindrospermop-
sis raciborskii
CS-505

CRC_00166
CRC_00787
CRC_01166
CRC_02438

CRC_03381 CRC_02913 CRC_00110

CRC_00115

CRC_01492
CRC_01573
CRC_03354
CRC_03451

CRC_00854

*InterPro conserved domains present on the proteins involved in well-characterized systems of bacterial EPS assembly and export that follow the ABC-dependent pathways.
The InterProScan Sequence Search ( Hunter et al., 2012 ) was performed for the following proteins: KpsM (AAD31428.1), KpsM (CAE55827.1), NMA0196 (YP_002341739.1),
BexB (CAA38733.1), KpsC (AAD32183.1), KpsC (CAE55818.1), NMA0186 (YP_002341732.1), KpsS (AAD32184.1), KpsS (CAE55819.1), NMA0185 (YP_002341731.1), KpsU
(CAE55817.1), KpsF (CAE55814.1), KpsE (AAD31430.1), KpsE (CAE55815.1), NMA0197 (YP_002341740.1), BexC (CAA38732.1), KpsD (AAD31427.1), KpsD (CAE55816.1),
NMA0198 (YP_002341741.1), BexD (CAA38730.1). Due to the involvement of IPR000644 and IPR013785 (Cystathionine beta-synthase, core and Aldolase-type TIM barrel,
respectively; KpsF), and IPR019554 (Soluble ligand binding domain; KpsD) in other cellular processes, these domains were excluded from searches. The characteristic InterPro domains
of KpsT, the nucleotide-binding subunit of the ABC transporter, were not screened due to their presence in other ATPases components ( Cuthbertson et al., 2010 ).