Biomedical Engineering Reference
In-Depth Information
30. For an 8 cm by 10 cm membrane, a minimum volume of 3 mL
of antibody diluent buffer solution is needed. The 5 % nonfat
milk in PBST buffer is used for both blocking and diluting the
primary and secondary antibodies for immunoblotting.
31. Depending on the strength of the signal, you may need to
dilute the detection solution if the illumination of the mem-
brane is too strong. A good starting dilution is 1:1:8 of lumi-
nol/catalyst/H 2 O, but this requires initial testing.
32. Adding 1 volume of TCA stock to 4 volumes of protein sample
works more effi ciently than a precipitation using a fi nal con-
centration of 10 % TCA. However, the pellet requires more
methanol-acetone washes.
33. The samples should be blue. If the sample turns yellow, there
is residual TCA present, turning the sample acidic. This may
interfere with the electrophoretic separation. Adjust the sam-
ples by adding a few microliters of 1 M Tris pH 8.8 until the
color returns to blue.
34. Various different cell lines can undergo treatment with
refreshed media by mixing the spent medium (Pro293a) with
medium required by the selected cell line.
References
1. Li H, Xiao H, Lin L, Jou D, Kumari V, Lin J,
Li C (2014) Drug design targeting
protein-protein interactions (PPIs) using mul-
tiple ligand simultaneous docking (MLSD)
and drug repositioning: discovery of raloxifene
and bazedoxifene as novel inhibitors of IL-6/
GP130 interface. J Med Chem 57:632-641
2. Romanov V, Davidoff SN, Miles AR, Grainger
DW, Gale BK, Brooks BD (2014) A critical
comparison of protein microarray fabrication
technologies. Analyst 139:1303-1326
3. Pereira-Leal JB, Levy ED, Kamp C, Teichmann
SA (2007) Evolution of protein complexes by
duplication of homomeric interactions.
Genome Biol 8:R51.1-R51.12
4. Ji YF, Huang H, Jiang F, Ni RZ, Xiao MB
(2014) S100 family signaling network and
related proteins in pancreatic cancer. Int J Mol
Med 33:769-776
5. Sun X, Hong P, Kulkarni M, Kwon Y, Perrimon
N (2013) PPIRank - an advanced method for
ranking protein-protein interations in TAP/MS
data. Proteome Sci 11(Suppl 1, S16):1-10
6. Guerrero C, Tagwerker C, Kaiser P, Huang L
(2006) An integrated mass spectrometry-
based proteomic approach: quantitative analy-
sis of tandem affi nity-purifi ed in vivo
cross-linked protein complexes (QTAX) to
decipher the 26 S proteasome-interacting net-
work. Mol Cell Proteomics 5:366-378
7. Cox AD, Hisaka MM, Buss JE, Der CJ (1992)
Specifi c isoprenoid modifi cation is required for
function of normal, but not oncogenic, Ras
protein. Mol Cell Biol 12:2606-2615
8. Van Huffel SC, Tham JM, Zhang X, Lim K,
Yang C, Tan Y, Ong F, Lee I, Hong W (2011)
Systematic analysis of secreted proteins reveals
synergism between IL6 and other proteins in
soft agar growth of MCF10A cells. Cell Biosci
1:13-25
9. Cox AD, Der CJ (1994) Biological assays for
cellular transformation. Methods Enzymol
238:277-294
10. Pear WS, Nolan GP, Scott ML, Baltimore D
(1993) Production of high-titer helper-free
retroviruses by transient transfection. Proc
Natl Acad Sci U S A 90:8392-8396
11. Pear WS, Scott ML, Nolan GP (1997)
Generation of high-titer, helper-free retrovi-
ruses by transient transfection. Methods Mol
Med 7:41-57
12. Altschul SF, Gish W, Miller W, Myers EW,
Lipman DJ (1990) Basic local alignment
search tool. J Mol Biol 215:403-410
Search WWH ::




Custom Search