Biomedical Engineering Reference
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Gennarino VA, Sardiello M, Mutarelli M, Dharmalingam G, Maselli V, Lago G, Banfi S (2011)
HOCTAR database: a unique resource for microRNA target prediction. Gene 480:51-58
Grimson A, Farh KK, Johnston WK, Garrett-Engele P, Lim LP, Bartel DP (2007) MicroRNA
targeting specificity in mammals: determinants beyond seed pairing. Mol Cell 27:91-105
Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Siederdis-
sen CH, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N,
Grillari J (2011) Next-generation sequencing of the Chinese hamster ovary microRNA transcrip-
tome: Identification, annotation and profiling of microRNAs as targets for cellular engineering.
J Biotechnol 153:62-75
Hammond S, Swanberg JC, Polson SW, Lee KH (2011) Profiling conserved MicroRNA expression
in recombinant CHO cell lines using Illumina sequencing. Biotechnol Bioeng
Hobert O (2004) Common logic of transcription factor and microRNA action. Trends Biochem Sci
29:462-468
Hofacker IL (2003) Vienna RNA secondary structure server. Nucleic Acids Res 31:3429-3431
Hsu SD, Lin FM, Wu WY, Liang C, Huang WC, Chan WL, Tsai WT, Chen GZ, Lee CJ, Chiu CM,
Chien CH, Wu MC, Huang CY, Tsou AP, Huang HD (2011) miRTarBase: a database curates
experimentally validated microRNA-target interactions. Nucleic Acids Res 39:D163-169
Hughes AE, Bradley DT, Campbell M, Lechner J, Dash DP, Simpson DA, Willoughby CE (2011)
Mutation altering the miR-184 seed region causes familial keratoconus with cataract. Am J Hum
Genet 89:628-633
Jiang P, Wu H, Wang W, Ma W, Sun X, Lu Z (2007) MiPred: classification of real and pseudo
microRNA precursors using random forest prediction model with combined features. Nucleic
Acids Res 35:W339-344
Jiang Q, Wang Y, Hao Y, Juan L, Teng M, Zhang X, Li M, Wang G, Liu Y (2009) miR2Disease:
a manually curated database for microRNA deregulation in human disease. Nucleic Acids Res
37:D98-104
John B, Enright AJ, Aravin A, Tuschl T, Sander C, Marks DS (2004) Human MicroRNA targets.
PLoS Biol 2:e363
Johnson KC, Jacob NM, Nissom PM, Hackl M, Lee LH, Yap M, Hu WS (2011) Conserved
microRNAs in Chinese hamster ovary cell lines. Biotechnol Bioeng 108:475-480
Kertesz M, Iovino N, Unnerstall U, Gaul U, Segal E (2007) The role of site accessibility in microRNA
target recognition. Nat Genet 39:1278-1284
Kim SK, Nam JW, Rhee JK, Lee WJ, Zhang BT (2006) miTarget: microRNA target gene prediction
using a support vector machine. BMC Bioinformatics 7:411
Kozomara A, Griffiths-Jones S (2011) miRBase: integrating microRNA annotation and deep-
sequencing data. Nucleic Acids Res 39:D152-157
Krek A, Grun D, Poy MN, Wolf R, Rosenberg L, Epstein EJ, MacMenamin P, da Piedade I, Gunsalus
KC, Stoffel M, Rajewsky N (2005) Combinatorial microRNA target predictions. Nat Genet
37:495-500
Kruger J, Rehmsmeier M (2006) RNAhybrid: microRNA target prediction easy, fast and flexible.
Nucleic Acids Res 34:W451-454
Lal A, Navarro F, Maher CA, Maliszewski LE, Yan N, O'Day E, Chowdhury D, Dykxhoorn DM,
Tsai P, Hofmann O, Becker KG, Gorospe M, Hide W, Lieberman J (2009) miR-24 Inhibits
cell proliferation by targeting E2F2, MYC, and other cell-cycle genes via binding to “seedless”
3 UTR microRNA recognition elements. Mol Cell 35:610-625
Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO,
Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U,
Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi
R, De Vita G, Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN, Benzing T, Lichter
P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo JJ, Sander C, Zavolan M, Tuschl T
(2007) A mammalian microRNA expression atlas based on small RNA library sequencing. Cell
129:1401-1414
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