Biomedical Engineering Reference
In-Depth Information
Acknowledgements This work was supported by funding from Science Foundation Ireland (SFI)
grant number 07/IN.1/B1323.
References
Alexiou P, Maragkakis M, Papadopoulos GL, Reczko M, Hatzigeorgiou AG (2009) Lost in
translation: an assessment and perspective for computational microRNA target identification.
Bioinformatics 25:3049-3055
Antonov AV, Dietmann S, Wong P, Lutter D, Mewes HW (2009) GeneSet2miRNA: finding the
signature of cooperative miRNA activities in the gene lists. Nucleic Acids Res 37:323-328
Azzouzi I, Moest H, Winkler J, Fauchere JC, Gerber AP, Wollscheid B, Stoffel M, Schmugge
M, Speer O (2011) MicroRNA-96 directly inhibits gamma-globin expression in human
erythropoiesis. PLoS One 6:e22838
Baek D, Villen J, Shin C, Camargo FD, Gygi S P, Bartel DP (2008) The impact of microRNAs on
protein output. Nature 455:64-71
Barron N, Kumar N, Sanchez N, Doolan P, Clarke C, Meleady P, O'Sullivan F, Clynes M (2011)
Engineering CHO cell growth and recombinant protein productivity by overexpression of miR-7.
J Biotechnol 151:204-211
Bartel DP (2009) MicroRNAs: target recognition and regulatory functions. Cell 136:215-233
Betel D, Wilson M, Gabow A, Marks DS, Sander C (2008) The microRNA.org resource: targets
and expression. Nucleic Acids Res 36:D149-153
Bort JA, Hackl M, Hoflmayer H, Jadhav V, Harreither E, Kumar N, Ernst W, Grillari J, Borth N (2011)
Dynamic mRNA and miRNA profiling of CHO-K1 suspension cell cultures. Biotechnol J
Brennecke J, Stark A, Russell RB, Cohen SM (2005) Principles of microRNA-target recognition.
PLoS Biol 3:e85
Chi SW, Zang JB, Mele A, Darnell RB (2009) Argonaute HITS-CLIP decodes microRNA-mRNA
interaction maps. Nature 460:479-486
Doench JG, Sharp PA (2004) Specificity of microRNA target selection in translational repression.
Genes Dev 18:504-511
Druz A, Chu C, Majors B, Santuary R, Betenbaugh M, Shiloach J (2011) A novel microRNA mmu-
miR-466h affects apoptosis regulation in mammalian cells. Biotechnol Bioeng 108:1651-1661
Dweep H, Sticht C, Pandey P, Gretz N (2011) miRWalk-database: prediction of possible miRNA
binding sites by “walking” the genes of three genomes. J Biomed Inform 44:839-847
Enright AJ, John B, Gaul U, Tuschl T, Sander C, Marks DS (2003) MicroRNA targets in Drosophila.
Genome Biol 5:R1
Farh KK, Grimson A, Jan C, Lewis BP, Johnston WK, Lim LP, Burge CB, Bartel DP (2005) The
widespread impact of mammalian MicroRNAs on mRNA repression and evolution. Science
310:1817-1821
Filipowicz W, Bhattacharyya SN, Sonenberg N (2008) Mechanisms of post-transcriptional
regulation by microRNAs: are the answers in sight? Nat Rev Genet 9:102-114
Friedman RC, Farh KK, Burge CB, Bartel DP (2009) Most mammalian mRNAs are conserved
targets of microRNAs. Genome Res 19:92-105
Gammell P, Barron N, Kumar N, Clynes M (2007) Initial identification of low temperature and
culture stage induction of miRNA expression in suspension CHO-K1 cells. J Biotechnol
130:213-218
Garcia DM, Baek D, Shin C, Bell GW, Grimson A, Bartel DP (2011) Weak seed-pairing stability
and high target-site abundance decrease the proficiency of lsy-6 and other microRNAs. Nat
Struct Mol Biol 18:1139-1146
Gennarino VA, Sardiello M, Avellino R, Meola N, Maselli V, Anand S, Cutillo L, Ballabio A,
Banfi S (2009) MicroRNA target prediction by expression analysis of host genes. Genome Res
19:481-490
Search WWH ::




Custom Search