Biology Reference
In-Depth Information
Table 1.
Top Protein Fold Matches for HAstV Nonstructural Proteins using 3D-PSSM Web Server
Template
Sequence
HAstV Region
a
Result
Superfamily
Length (aa)
Identity (%)
E-value
nsP1a
191-353
Dodecameric ferritin
DNA protecting protein
159
10
0.562
homolog DPS
during starvation (DPS);
Ferritin-like
370-655
DegP (HtrA)
Heat shock protease HtrA
299
13
2.68e-10
596-739
Sarcoplasmic calcium-
EF-hand, calmoduline-like
174
9
0.686
binding protein
607-737
Human Fas
Death domain
127
22
8.52
718-897
Tumor suppressor bin1
Myc box dependent
213
18
1.71
(amphiphysin II)
interacting protein 1;
endocytosis/exocytosis
nsP1b
44-515
Rabbit hemorrhagic
RNA-directed RNA
493
13
0.149e-3
disease virus RNA-2
polymerase
dependent RNA
polymerase
a
Amino acid (aa) positions are numbered according to HAstV-1 Oxford reference strain (accession no. L23513).
