Biology Reference
In-Depth Information
Table 1: contd....
S.no.
Cyanobacterium
Abbreviation
Genome size
(MB)
Habitat
Genome Accession no.
42.
Synechococcus
sp. RS9916
Syn-RS9916
2.66
M
gb: 1100013018508
Dufresne
et al
. (2008)
43.
Synechococcus
sp. RS9917
Syn-RS9917
2.58
M
gb: 1099465004208
Dufresne
et al
. (2008)
44.
Synechococcus
sp. WH5701
Syn-WH5701
2.86
M
gb: 1099465003749-1099465003864
Dufresne
et al
. (2008)
45.
Synechococcus
sp. WH7803
Syn-WH7803
2.37
M
embl: CT971583
Dufresne
et al
. (2008)
46.
Synechococcus
sp. WH7805
Syn-WH7805
2.62
M
gb: 1099646010155-1099646010157
Dufresne
et al
. (2008)
47.
Synechococcus
sp. WH8102
Syn-WH8102
2.43
M
gb: BX548020
Palenik
et al
. (2003)
48.
Synechocystis
sp. PCC 6803
Syn-PCC 6803
3.57
FW
embl: BA000022
Kaneko
et al
. (1996)
49.
Thermosynechococcus
elongatus
BP-1
Tel-BP1
2.59
HS
embl: BA000039
Nakamura
et al
. (2002)
50.
Trichodesmium
erythreum
IMS101
Ter-IMS101
7.80
M
embl: CP000393
Note:
Genome details of nine strains (Ava-ATCC 29413; Cth-CCY0110; CWa-WH8501; Mch-PCC 7420; Pro-NATL2A; Syn-PCC
7002, Syn-PCC 7942, Syn-PCC 7335 and Ter-IMS101) can be found on the website of JGI and those of two others (Lae-PCC
8106 and Nsp-CCY9414) on the website of JCVI. The rest of the 39 fully sequenced cyanobacterial genomes are described
in the text. This Table is based on the list of strains with their genome sizes provided in Frangeul
et al.
(2008)
BMC Genomics
9
:274; doi:10.1186/1471-2164-9-274]. Abbreviations: FW=Freshwater; HS=Hot Spring; M=Marine; R=Rock; S=Soil; SL=Salt
Lakes; Sy=Symbiotic.
Gloeobacter violaceus
PCC 7421 (cyanobacterium lacking thylakoids; Nakamura
et al
., 2003),
Microcystis
aeruginosa
NIES-843 (Kaneko
et al
., 2007),
M
.
aeruginosoa
PCC 7806 (Franguel
et al
., 2008), 12 strains of
Prochlorococcus marinus
of which six strains (NATL1A, SS120, MIT 9211, MIT 9303, MIT 9313) are low-
light (LL-) and six others (MIT9215, MIT9301, MIT9312, AS9601, MIT9515, MED4) are high-light (HL-)
adapted strains (Rocap
et al
., 2003; Dufresne
et al
., 2005; Kettler
et al
., 2007),
Synechococcus
elongatus
PCC 6301 (Sugita
et al
., 2006), and 11 strains of
Synechococcus
(WH8102, CC9311, Palenik
et al
., 2003,
2006; BL107, CC9605, CC9902, RCC307, RS9916, RS9917, WH5701, WH7803, WH7805; Dufresne
et
al
., 2008),
Synechocystis
sp. strain PCC 6803 (Kaneko
et al
., 1996), and
Thermosynechococcus elongatus
strain BP-1 (Nakamura
et al
., 2002). The non-heterocystous fi lamentous forms, whose genomes are
sequenced, belong to
Arthrospira
(
Spirulina
)
platensis
NIES-39 (Fujisawa
et al
., 2010),
Arthrospira
sp.
PCC 8005 (Janssen
et al
., 2010),
Oscillatoria
sp. PCC 6506 (Méjean
et al
., 2010b),
Raphidiopsis brookii
D9 (a strain that is defective in heterocyst formation; Stucken
et al
., 2010),
and
Lyngbya majuscula
3L
(Jones
et al.
, 2011). The heterocystous fi lamentous forms, whose genomes have been sequenced, are
Anabaena
PCC 7120 (Kaneko
et al
., 2001),
Cylindrospermopsis raciborskii
CS-505 (Stucken
et al
., 2010),
Nostoc azollae
0708 (Ran
et al
., 2010) and
Nostoc punctiforme
ATCC 29133 (PCC 73102; Meeks
et al
., 2001).
The draft sequences of 17 cyanobacterial genomes [
Arthrospira maxima
CS-328,
Crocosphaera watsonii
WH8501 (syn.
Synechocystis
sp. WH8501), six strains of
Cyanothece
sp. (strains PCC 7424, PCC 7425,
PCC 7822, PCC 8801, PCC 8802, CCY 0110),
P
.
marinus
NATL2A,
Synechococcus elongatus
PCC 7942,
Synechococcus
sp. PCC 7002 (ATCC 27264; synonym of
Agmenellum quadruplicatum
PR-6);
Synechococcus