Biology Reference
In-Depth Information
Table 1: contd....
S.no.
Cyanobacterium
Abbreviation
Genome size
(MB)
Habitat
Genome Accession no.
42.
Synechococcus sp. RS9916
Syn-RS9916
2.66
M
gb: 1100013018508
Dufresne et al . (2008)
43.
Synechococcus sp. RS9917
Syn-RS9917
2.58
M
gb: 1099465004208
Dufresne et al . (2008)
44.
Synechococcus sp. WH5701
Syn-WH5701
2.86
M
gb: 1099465003749-1099465003864
Dufresne et al . (2008)
45.
Synechococcus sp. WH7803
Syn-WH7803
2.37
M
embl: CT971583
Dufresne et al . (2008)
46.
Synechococcus sp. WH7805
Syn-WH7805
2.62
M
gb: 1099646010155-1099646010157
Dufresne et al . (2008)
47.
Synechococcus sp. WH8102
Syn-WH8102
2.43
M
gb: BX548020
Palenik et al . (2003)
48.
Synechocystis sp. PCC 6803
Syn-PCC 6803
3.57
FW
embl: BA000022
Kaneko et al . (1996)
49.
Thermosynechococcus
elongatus BP-1
Tel-BP1
2.59
HS
embl: BA000039
Nakamura et al . (2002)
50.
Trichodesmium
erythreum IMS101
Ter-IMS101
7.80
M
embl: CP000393
Note: Genome details of nine strains (Ava-ATCC 29413; Cth-CCY0110; CWa-WH8501; Mch-PCC 7420; Pro-NATL2A; Syn-PCC
7002, Syn-PCC 7942, Syn-PCC 7335 and Ter-IMS101) can be found on the website of JGI and those of two others (Lae-PCC
8106 and Nsp-CCY9414) on the website of JCVI. The rest of the 39 fully sequenced cyanobacterial genomes are described
in the text. This Table is based on the list of strains with their genome sizes provided in Frangeul et al. (2008) BMC Genomics
9 :274; doi:10.1186/1471-2164-9-274]. Abbreviations: FW=Freshwater; HS=Hot Spring; M=Marine; R=Rock; S=Soil; SL=Salt
Lakes; Sy=Symbiotic.
Gloeobacter violaceus PCC 7421 (cyanobacterium lacking thylakoids; Nakamura et al ., 2003), Microcystis
aeruginosa NIES-843 (Kaneko et al ., 2007), M . aeruginosoa PCC 7806 (Franguel et al ., 2008), 12 strains of
Prochlorococcus marinus of which six strains (NATL1A, SS120, MIT 9211, MIT 9303, MIT 9313) are low-
light (LL-) and six others (MIT9215, MIT9301, MIT9312, AS9601, MIT9515, MED4) are high-light (HL-)
adapted strains (Rocap et al ., 2003; Dufresne et al ., 2005; Kettler et al ., 2007), Synechococcus elongatus
PCC 6301 (Sugita et al ., 2006), and 11 strains of Synechococcus (WH8102, CC9311, Palenik et al ., 2003,
2006; BL107, CC9605, CC9902, RCC307, RS9916, RS9917, WH5701, WH7803, WH7805; Dufresne et
al ., 2008), Synechocystis sp. strain PCC 6803 (Kaneko et al ., 1996), and Thermosynechococcus elongatus
strain BP-1 (Nakamura et al ., 2002). The non-heterocystous fi lamentous forms, whose genomes are
sequenced, belong to Arthrospira ( Spirulina ) platensis NIES-39 (Fujisawa et al ., 2010), Arthrospira sp.
PCC 8005 (Janssen et al ., 2010), Oscillatoria sp. PCC 6506 (Méjean et al ., 2010b), Raphidiopsis brookii
D9 (a strain that is defective in heterocyst formation; Stucken et al ., 2010), and Lyngbya majuscula 3L
(Jones et al. , 2011). The heterocystous fi lamentous forms, whose genomes have been sequenced, are
Anabaena PCC 7120 (Kaneko et al ., 2001), Cylindrospermopsis raciborskii CS-505 (Stucken et al ., 2010),
Nostoc azollae 0708 (Ran et al ., 2010) and Nostoc punctiforme ATCC 29133 (PCC 73102; Meeks et al ., 2001).
The draft sequences of 17 cyanobacterial genomes [ Arthrospira maxima CS-328, Crocosphaera watsonii
WH8501 (syn. Synechocystis sp. WH8501), six strains of Cyanothece sp. (strains PCC 7424, PCC 7425,
PCC 7822, PCC 8801, PCC 8802, CCY 0110), P . marinus NATL2A, Synechococcus elongatus PCC 7942,
Synechococcus sp. PCC 7002 (ATCC 27264; synonym of Agmenellum quadruplicatum PR-6); Synechococcus
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