TAXONOMY, PHYLOGENY AND EVOLUTION - Cyanobacteria - page 62

Chisholm, S. W. (1992) Phytoplankton size. In: Falkowski, P. G. and Woodhead, A. D. (Eds.) Primary Productivity and
Biogeochemical Cycles in the Sea. Plenum Press, New York, NY, USA. pp. 213-237.
Chisholm, S. W., Frankel, S. L., Goericke, R., Olson, R. J., Palenik, B., Waterbury, J. B., West-Johnsrud, L., and Zettler, E. R.
(1992) Prochlorococcus marinus nov. gen. nov. sp . : an oxyphototrophic marine prokaryote containing divinyl chlorophyll
a and b . Arch Microbiol 157: 297-300.
Chisholm, S. W., Olson, R. J., Zettler, E. R., Goericke, R., Waterbury, J., and Welschmeyer, N. (1988) A novel free-living
prochlorophyte abundant in the oceanic euphotic zone. Nature (London) 334: 340-343.
Clemente, J. C., Satou, K., and Valiente, G. (2006) Phylogenetic reconstruction from non-genomic data. Bioinformatics 23:
e110-e115. doi: 10/bioinformatics/bt1307
Cohan, F. M. (2002) What are bacterial species? Annu Rev Microbiol 56: 457-487. doi: 10.1146/annurev.micro.56.
012302.160634
Cohan, F. M. (2006) Towards a conceptual and operational union of bacterial systematic, ecology and evolution. Phil Trans
R Soc B 361: 1985-1996.
Cohn, F. (1872) Grundzüge einer nuen natürlichen Anordnung der Kryptogamischen Pfl anzen. Jarhb Schles Ges Vaterl KuH
49: 83-89.
Cohn, F. (1875) Untersuchungen über Bakterien. II. Beitr Biol Pfl anz 1: 141-207.
Cottret, L., Wildridge, D., Vinson, F., Barett, M. P., Charles, H., Sagot, M. F., and Jourdan, F. (2010) Met Explore: a webserver
to link metabolic experiments and genome-scale metabolic net works. Nucleic Acids Res 38: W132-W137. doi: 10.1093/
nar/gicq312
Crosbie, N. D., Pöckl, M., and Weisse, T. (2003) Dispersal and phylogenetic diversity of nonmarine picocyanobacteria, inferred
from 16S rRNA gene and cpc -intergenic spacer sequence analysis. Appl Environ Microbiol 69: 5716-5721.
D'Auria, G., Pushker, R., and Rodríguez-Valera, F. (2006) IWoCS: analyzing ribosomal intergenic transcribed spacers
configuration and taxonomic relationships. Bioinformatics 22: 527-531.
Dagan, T., Artzy-Randrup, Y., and Martin, W. (2008) Modular networks and cumulative impact of lateral transfer in prokaryote
genome evolution. Proc Natl Acad Sci USA 105: 10039-10044.
Danovaro, R., Luna, G. M., Dell'Anno, A., and Pietrangeli, B. (2006) Comparison of two fi ngerprinting techniques, terminal
restriction fragment length polymorphism and automated ribosomal intergenic spacer analysis, for determination of
bacterial diversity in aquatic environments. Appl Environ Microbiol 72: 5982-5989.
Darwin, C. (1859) On the Origin of Species . Murray, London.
Darwin, C. (1872) The Origin of Species . 6th edn. Murray, London.
Desikachary, T. V. (1959) Cyanophyta . Indian Council Agricultural Research, New Delhi.
De Vos, P., and Trüper, H. G. (2000) Judicial Commission of the International Committee on Systematic Bacteriology. IXth
International (IUMS) Congress of Bacteriology and Applied Microbiology. Minutes of the meetings, 14, 15 and 18 August
1999, Sydney, Australia. Int J Syst Evol Microbiol 50: 2239-2244.
Dobzhansky, T. (1937) Genetics and the Origin of Species . Columbia University Press, New York, NY, USA.
Dobzhansky, T. (1951) Genetics and the Origin of Species . 2nd edn. Columbia University Press, New York, NY, USA.
Doolittle, R. F., Feng, D. F., Tsang, S., Cho, G., and Little, E. (1996) Determining divergence times of the major kingdoms of
living organisms with a protein clock. Science 271: 470-477.
Doolittle, W. F., and Bapteste, E. (2007) Pattern pluralism and the tree of life hypothesis. Proc Natl Acad Sci USA 104:
2043-2049.
Drouet, F. (1981) Revision of the Stigonemataceae with a summary of the classifi cation of the blue-green algae. Nova Hedwigia
66 : 1-221 .
Drouet, F., and Daily, W. A. (1956) Revision of the coccoid Myxophyceae. Butler University Botanical Studies 12: 1-218 .
Dunbar, J., Ticknor, L. O., and Kuske, C. R. (2000) Assessment of microbial diversity in four southwestern United States soils
by 16S rRNA gene terminal restriction fragment analysis. Appl Environ Microbiol 66: 2943-2950.
Dunbar, J., Ticknor, L. O., and Kuske, C. R. (2001) Phylogenetic specifi city and reproducibility and new method for analysis
of terminal restriction fragment profi les of 16S rRNA genes from bacterial communities. Appl Environ Microbiol 67:
190-197.
Egholm, M., Buchardt, O., Christensen, L., Behrens, C., Freler, S. M., Driver, D. A., Berg, R. H., Kim, S. K., Norden, B., and
Nielsen, P. E. (1993) PNA hybridizes to complementary oligonucleotides obeying the Watson-Crick hydrogen bonding
rules. Nature (London) 365: 266-268.
Eisen, J. A. (1998) Phylogenomics: Improving functional predictions for uncharacterized genes by evolutionary analysis.
Genome Res 8: 163-167.
Eisen, J. A., and Fraser, C. M. (2003) Phylogenomics: Intersection of evolution and genomics. Science 300: 1706-1707.
El Fantroussi, S., Urakawa, H., Bernhard, A. E., Kelly, J. J., Noble, P. A., Smidt, H., Yershov, G. M. and Stahl, D. A. (2003)
Direct profi ling of environmental microbial populations by thermal dissociation analysis of native rRNAs hybridized
to oligonucleotide microarrays. Appl Environ Microbiol 69: 2377-2382.