Biomedical Engineering Reference
In-Depth Information
21. Mackiewicz, P., Dudkiewicz, M., Kowalczuk, M., Mackiewicz, D., Banaszak, J., Polak,
N., Smolarczyk, K., Nowicka, A., Dudek, M.R., Cebrat, S.: Differential Gene Survival un-
der Asymmetric Directional Mutational Pressure. In: Bubak, M., van Albada, G.D., Sloot,
P.M.A., Dongarra, J. (eds.) ICCS 2004. LNCS, vol. 3039, pp. 687-693. Springer, Heidelberg
(2004)
22. Dudkiewicz, M., Mackiewicz, P., Kowalczuk, M., Mackiewicz, D., Nowicka, A., Polak, N.,
Smolarczyk, K., Kriaga, J., Dudek, M.R., Cebrat, S.: Simulation of gene evolution under
directional mutational pressure. Physica A 336, 63-73 (2004)
23. Dudkiewicz, M., Mackiewicz, P., Mackiewicz, D., Kowalczuk, M., Nowicka, A., Polak, N.,
Smolarczyk, K., Kiraga, J., Dudek, M.R., Cebrat, S.: Higher mutation rate helps to rescue
genes from the elimination by selection. Biosystems 80, 192-199 (2005)
24. Mackiewicz, D., Cebrat, S.: To understand nature computer modelling between genetics and
evolution. In: Miekisz, J., Lachowicz, M. (eds.) From Genetics to Mathematics. Series on
Advances in Mathematics for Applied Sciences, vol. 79, pp. 1-33. World Scientific (2009)
25. Mackiewicz, P., Szczepanik, D., Gierlik, A., Kowalczuk, M., Nowicka, A., Dudkiewicz,
M., Dudek, M.R., Cebrat, S.: The differential killing of genes by inversions in prokaryotic
genomes. J. Mol. Evol. 53, 615-621 (2001)
26. Mackiewicz, D., Mackiewicz, P., Kowalczuk, M., Dudkiewicz, M., Dudek, M.R., Cebrat,
S.: Rearrangements between differently replicating DNA strands in asymmetric bacterial
genomes. Acta Microbiologica Polonica 52, 245-261 (2003)
27. Rocha, E., Danchin, A.: Gene essentiality determines chromosome organisation in bacteria.
Nucleic Acids Res. 31, 5202-5211 (2003)
28. Rocha, E., Danchin, A.: Essentiality, not expressiveness, drives gene strand bias in bacteria.
Nature Genetics 34, 377-378 (2003)
29. Błazej, P., Mackiewicz, P., Cebrat, S.: Using the genetic code wisdom for recognizing protein
coding sequences. In: Proceedings of the 2010 International Conference on Bioinformatics
& Computational Biology, BIOCOMP 2010, pp. 302-305. CSREA Press, Las Vegas (2010)
30. Błazej, P., Mackiewicz, P., Cebrat, S.: Algorithm for finding coding signal using homoge-
neous markov chains independently for three codon positions. In: Proceedings of the 2011
International Conference on Bioinformatics and Computational Biology, ICBCB 2011, pp.
20-24. IEEE, Chengdu (2011)
31. Mackiewicz, P., Gierlik, A., Kowalczuk, M., Szczepanik, D., Dudek, M.R., Cebrat, S.: Mech-
anisms generating long-range correlation in nucleotide composition of the Borrelia burgdor-
feri genome. Physica A 273, 103-115 (1999)
32. National Center for Biotechnology Information, http://www.ncbi.nlm.nih.gov
33. Wanczyk, M., Błazej, P., Mackiewicz, P.: Comparison of two algorithms based on markov
chains applied in recognition of protein coding sequences in prokaryotes. In: Proceedings
of the Seventeeth National Conference on Applications of Mathematics in Biology and
Medicine, pp. 118-123. QPrint, Warsaw (2011)
34. Cebrat, S., Dudek, M.R., Mackiewicz, P., Kowalczuk, M., Fita, M.: Asymmetry of coding
versus non-coding strand in coding sequences of different genomes. Microbial and Compar-
ative Genomics 2, 259-268 (1997)
35. Cebrat, S., Dudek, M.R., Mackiewicz, P.: Sequence asymmetry as a parameter indicating
coding sequence in Saccharomyces cerevisiae genome. Theory in Biosciences 117, 78-89
(1998)
36. Khrustalev, V., Barkovsky, E.: The probability of nonsense mutation caused by replication-
associated mutational pressure is much higher for bacterial genes from lagging than from
leading strands. Genomics 96, 173-180 (2010)
 
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