Biomedical Engineering Reference
In-Depth Information
References
1. Frank, A., Lobry, J.: Asymmetric substitution patterns: a review of possible underlying mu-
tational or selective mechanisms. Gene 238, 65-77 (1999)
2. Kowalczuk, M., Mackiewicz, P., Mackiewicz, D., Nowicka, A., Dudkiewicz, M., Dudek,
M.R., Cebrat, S.: DNA asymmetry and the replicational mutational pressure. J. Appl.
Genet. 42, 553-557 (2001)
3. Kowalczuk, M., Mackiewicz, P., Mackiewicz, D., Nowicka, A., Dudkiewicz, M., Dudek,
M.R., Cebrat, S.: High correlation between the turnover of nucleotides under mutational
pressure and the DNA composition. BMC Evol. Biol. 1, 1-13 (2001)
4. Rocha, E., Danchin, A.: Ongoing evolution of strand composition in bacterial genomes. Mol.
Biol. Evol. 18, 1789-1799 (2001)
5. Rocha, E., Touchon, M., Feil, E.: Similar compositional biases are caused by very different
mutational effects. Genome Res. 16, 1537-1547 (2006)
6. Lobry, J.: Asymmetric substitution patterns in the two DNA strands of bacteria. Mol. Biol.
Evol. 13, 660-665 (1996)
7. Freeman, J., Plasterer, T., Smith, T., Mohr, S.: Patterns of genome organization in bacteria.
Science 279, 1827 (1998)
8. Grigoriev, A.: Analysing genomes with cumulative skew diagrams. Nucleic Acids Res. 26,
2286-2290 (1998)
9. McLean, M., Wolfe, K., Devine, K.: Base composition skews, replication orientation, and
gene orientation in 12 prokaryote genomes. J. Mol. Evol. 47, 691-696 (1998)
10. Mrazek, J., Karlin, S.: Strand compositional asymmetry in bacterial and large viral genomes.
Proc. Natl. Acad. Sci. 95, 3720-3725 (1998)
11. Mackiewicz, P., Gierlik, A., Kowalczuk, M., Dudek, M.R., Cebrat, S.: Asymmetry of nu-
cleotide composition of prokaryotic chromosomes. J. Appl. Genet. 40, 1-14 (1999)
12. Tillier, E., Collins, R.: The contributions of replication orientation, gene direction, and signal
sequences to base composition asymmetries in bacterial genomes. J. Mol. Evol. 51, 459-463
(2000)
13. Lobry, J., Sueoka, N.: Asymmetric directional mutation pressures in bacteria. Genome
Biol. 3, 58 (2002)
14. McInerney, J.: Replicational and transcriptional selection on codon usage in Borrelia
burgdorferi . Proc. Natl. Acad. Sci. 95, 10698-10703 (1998)
15. Lafay, B., Lloyd, A., McLean, M., Devine, K., Sharp, P., Wolfe, K.: Proteome composition
and codon usage in spirochaetes: species-specific and DNA strand-specific mutational biases.
Nucleic Acids Res. 27, 1642-1649 (1999)
16. Mackiewicz, P., Gierlik, A., Kowalczuk, M., Dudek, M.R., Cebrat, S.: How does replication-
associated mutational pressure influence amino acid composition of proteins? Genome
Res. 9, 409-416 (1999)
17. Rocha, E., Danchin, A., Viari, A.: Universal replication biases in bacteria. Mol. Micro-
biol. 32, 11-16 (1999)
18. Tillier, E., Collins, R.: Replication orientation affects the rate and direction of bacterial gene
evolution. J. Mol. Evol. 51, 459-463 (2000)
19. Szczepanik, D., Mackiewicz, P., Kowalczuk, M., Gierlik, A., Nowicka, A., Dudek, M.R.,
Cebrat, S.: Evolution rates of genes on leading and lagging DNA strands. J. Mol. Evol. 52,
426-433 (2001)
20. Mackiewicz, P., Mackiewicz, D., Kowalczuk, M., Dudkiewicz, M., Dudek, M.R., Cebrat,
S.: High divergence rate of sequences located on different DNA strands in closely related
bacterial genomes. J. Appl. Genet. 44, 561-584 (2003)
Search WWH ::




Custom Search