Biomedical Engineering Reference
In-Depth Information
Nucleotide Sequence
GenBank
One of the largest public sequence
databases
DDBJ
DNA DataBank of Japan
EMBL
European Molecular Biology
Laboratory
MGDB
Mouse Genome Database
GSX
Mouse Gene Expression Database
NDB
Nucleic Acid Database
Protein Sequence
SWISS-PROT
Swiss Institute for Bioinformatics and
European Bioinformatics Institute
TrEMBL
Annotated supplement to SWISS-
PROT
TrEMBLnew
Weekly, pre-processed update to
TrEMBL
PIR
Protein Information Resource
3D Structures
PDB
Protein DataBank
MMDB
Molecular Modeling Database
Cambridge Structural
Database
For small molecules
Enzymes and Compounds
LIGAND
Chemical compounds and reactions
Sequence Motifs (Alignment) PROSITE
Sequence motifs
BLOCKS
Derived from PROSITE
PRINTS
A superset of BLOCKS
Pfam
Protein families database of
alignments and hidden Markov
models
ProDOM
Protein Domains
Pathways and Complexes
Pathway
Metabolic and regulatory pathway
maps
Molecular Disease
OMIM
Online Mendelian Inheritance in Man
Biomedical Literature
PubMed
Contains Medline
Medline
Medical Literature
Vectors
UniVec
Used to identify vector contamination
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